RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 CDK2AP1O14519 115 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 KHNYNO15037 678 aaKnown RBP6.4□□□□□ -1.38
VTI1B-202ENST00000553619 IPO8O15397 1037 aaKnown RBP6.4□□□□□ -1.38
VTI1B-202ENST00000553619 DGKGP49619 791 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 TNP2Q05952 138 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 EXOSC9Q06265 439 aaKnown RBP6.4□□□□□ -1.38
VTI1B-202ENST00000553619 TMEM132AQ24JP5 1023 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 ALDH1L2Q3SY69 923 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 ERICH6BQ5W0A0 696 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 NFATC2IPQ8NCF5 419 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 QTRT2Q9H974 415 aaKnown RBP6.4□□□□□ -1.38
VTI1B-202ENST00000553619 SLC52A2Q9HAB3 445 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 LGR6Q9HBX8 967 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 ZDHHC3Q9NYG2 299 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 KLF15Q9UIH9 416 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 RBM19Q9Y4C8 960 aaKnown RBP6.4□□□□□ -1.38
VTI1B-202ENST00000553619 PARP3Q9Y6F1 533 aa6.4□□□□□ -1.38
VTI1B-202ENST00000553619 FANCIQ9NVI1 1328 aa6.4□□□□□ -1.39
VTI1B-202ENST00000553619 CEMIPQ8WUJ3 1361 aa6.4□□□□□ -1.39
VTI1B-202ENST00000553619 OVOS2A0A0G2JMS6 1433 aa6.4□□□□□ -1.39
VTI1B-202ENST00000553619 PLCH1Q4KWH8 1693 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 GNB5O14775 395 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 CYP27B1O15528 508 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 VAMP4O75379 141 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 HOXB7P09629 217 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 HMGB2P26583 209 aaKnown RBP6.39□□□□□ -1.39
VTI1B-202ENST00000553619 GTF2IP78347 998 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 TWISTNBQ3B726 338 aaPredicted RBP6.39□□□□□ -1.39
VTI1B-202ENST00000553619 CHSY3Q70JA7 882 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 ALYREFQ86V81 257 aaKnown RBP6.39□□□□□ -1.39
VTI1B-202ENST00000553619 FCHSD1Q86WN1 690 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 TRIM50Q86XT4 487 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 TTC5Q8N0Z6 440 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 TSR2Q969E8 191 aaKnown RBP6.39□□□□□ -1.39
VTI1B-202ENST00000553619 ZIC5Q96T25 663 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 THUMPD2Q9BTF0 503 aaKnown RBP6.39□□□□□ -1.39
VTI1B-202ENST00000553619 GJA3Q9Y6H8 435 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 AFF2P51816 1311 aa6.39□□□□□ -1.39
VTI1B-202ENST00000553619 FAM157BP0CG42 384 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 CANXP27824 592 aaKnown RBP6.38□□□□□ -1.39
VTI1B-202ENST00000553619 TXLNAP40222 546 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 BAG6P46379 1132 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 ATP1A2P50993 1020 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 FAM182BQ5T319 152 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 CCDC30Q5VVM6 783 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 ZDHHC1Q8WTX9 485 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 POM121Q96HA1 1249 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 STK31Q9BXU1 1019 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 TEX13AQ9BXU3 409 aaPredicted RBP6.38□□□□□ -1.39
VTI1B-202ENST00000553619 CHMP4BQ9H444 224 aaKnown RBP6.38□□□□□ -1.39
VTI1B-202ENST00000553619 ALG2Q9H553 416 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 ZNF358Q9NW07 568 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 CHMP3Q9Y3E7 222 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 BCL9LQ86UU0 1499 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 MEGF6O75095 1541 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 PKD1L3Q7Z443 1732 aa6.38□□□□□ -1.39
VTI1B-202ENST00000553619 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.38□□□□□ -1.39
VTI1B-202ENST00000553619 CACNA1FO60840 1977 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 VIRMAQ69YN4 1812 aaKnown RBP6.37□□□□□ -1.39
VTI1B-202ENST00000553619 SCN11AQ9UI33 1791 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 NRAPQ86VF7 1730 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 USP17L5A8MUK1 530 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 ELL2O00472 640 aaPredicted RBP6.37□□□□□ -1.39
VTI1B-202ENST00000553619 ADH6P28332 368 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 RARSP54136 660 aaKnown RBP6.37□□□□□ -1.39
VTI1B-202ENST00000553619 PCBP4P57723 403 aaKnown RBP6.37□□□□□ -1.39
VTI1B-202ENST00000553619 RBM6P78332 1123 aaKnown RBP6.37□□□□□ -1.39
VTI1B-202ENST00000553619 NCOA4Q13772 614 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 ZNF790Q6PG37 636 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.37□□□□□ -1.39
VTI1B-202ENST00000553619 FMNL2Q96PY5 1086 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 TMOD3Q9NYL9 352 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 MIS18AQ9NYP9 233 aa6.37□□□□□ -1.39
VTI1B-202ENST00000553619 DISP2A7MBM2 1401 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 RNF123Q5XPI4 1314 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 KIF16BQ96L93 1317 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 K7ELQ4 463 aaPredicted RBP6.36□□□□□ -1.39
VTI1B-202ENST00000553619 SNRPA1P09661 255 aaKnown RBP6.36□□□□□ -1.39
VTI1B-202ENST00000553619 RRP1P56182 461 aaKnown RBP6.36□□□□□ -1.39
VTI1B-202ENST00000553619 EIF4A1P60842 406 aaKnown RBP6.36□□□□□ -1.39
VTI1B-202ENST00000553619 AAMPQ13685 434 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 PDE3AQ14432 1141 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 TBCELQ5QJ74 424 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 SAMD5Q5TGI4 173 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 ZKSCAN2Q63HK3 967 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 BICDL1Q6ZP65 573 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 DEPDC4Q8N2C3 294 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 C8orf58Q8NAV2 365 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 ARHGAP45Q92619 1136 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 SMARCC1Q92922 1105 aaPredicted RBP6.36□□□□□ -1.39
VTI1B-202ENST00000553619 AVENQ9NQS1 362 aaPredicted RBP6.36□□□□□ -1.39
VTI1B-202ENST00000553619 SMC4Q9NTJ3 1288 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 SCHIP1Q9P0W5 487 aaPredicted RBP6.36□□□□□ -1.39
VTI1B-202ENST00000553619 LRP6O75581 1613 aa6.36□□□□□ -1.39
VTI1B-202ENST00000553619 ATRNO75882 1429 aa6.35□□□□□ -1.39
VTI1B-202ENST00000553619 C1QTNF9BB2RNN3 333 aa6.35□□□□□ -1.39
VTI1B-202ENST00000553619 EFSO43281 561 aa6.35□□□□□ -1.39
VTI1B-202ENST00000553619 BCAR3O75815 825 aa6.35□□□□□ -1.39
VTI1B-202ENST00000553619 FURINP09958 794 aa6.35□□□□□ -1.39
VTI1B-202ENST00000553619 RXRBP28702 533 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms