RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 BHLHE41Q9C0J9 482 aaPredicted RBP3.74□□□□□ -1.81
LIMA1-207ENST00000551486 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.74□□□□□ -1.81
LIMA1-207ENST00000551486 ZNF503-AS2A6NEH8 195 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 DYNC1LI2O43237 492 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-207ENST00000551486 PHACTR2O75167 634 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 INHBBP09529 407 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 CD96P40200 585 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 DNM1Q05193 864 aaKnown RBP3.73□□□□□ -1.81
LIMA1-207ENST00000551486 PDE3AQ14432 1141 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 OCLNQ16625 522 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 TMEM67Q5HYA8 995 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 CIAPIN1Q6FI81 312 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 FBXO15Q8NCQ5 510 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-207ENST00000551486 ASB11Q8WXH4 323 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 LIN37Q96GY3 246 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-207ENST00000551486 GSX1Q9H4S2 264 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-207ENST00000551486 CXXC1Q9P0U4 656 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-207ENST00000551486 SNX11Q9Y5W9 270 aa3.73□□□□□ -1.81
LIMA1-207ENST00000551486 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-207ENST00000551486 SYNGAP1Q96PV0 1343 aa3.72□□□□□ -1.81
LIMA1-207ENST00000551486 CEACAM5P06731 702 aa3.72□□□□□ -1.81
LIMA1-207ENST00000551486 GLI1P08151 1106 aa3.72□□□□□ -1.81
LIMA1-207ENST00000551486 C1QTNF9P0C862 333 aa3.72□□□□□ -1.81
LIMA1-207ENST00000551486 PCDH1Q08174 1060 aa3.72□□□□□ -1.81
LIMA1-207ENST00000551486 IKZF1Q13422 519 aa3.72□□□□□ -1.81
LIMA1-207ENST00000551486 CDCA8Q53HL2 280 aa3.72□□□□□ -1.81
LIMA1-207ENST00000551486 DBX2Q6ZNG2 339 aa3.72□□□□□ -1.81
LIMA1-207ENST00000551486 CLEC4MQ9H2X3 399 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-207ENST00000551486 CRIM1Q9NZV1 1036 aa3.72□□□□□ -1.81
LIMA1-207ENST00000551486 TTBK1Q5TCY1 1321 aaPredicted RBP3.71□□□□□ -1.81
LIMA1-207ENST00000551486 NPIPB6E9PJ23 425 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 EREGO14944 169 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 AOC2O75106 756 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 SLFN14P0C7P3 912 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 MZF1P28698 734 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-207ENST00000551486 ZP2Q05996 745 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 EHHADHQ08426 723 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 CDK5R2Q13319 367 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 NOM1Q5C9Z4 860 aaKnown RBP3.71□□□□□ -1.82
LIMA1-207ENST00000551486 ATCAYQ86WG3 371 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 SNX29Q8TEQ0 813 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 RELTQ969Z4 430 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 KIRREL1Q96J84 757 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 NRSN2Q9GZP1 204 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 CHRDQ9H2X0 955 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 GGNBP2Q9H3C7 697 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 ATXN3LQ9H3M9 355 aa3.71□□□□□ -1.82
LIMA1-207ENST00000551486 A0A096LPE4 126 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 A0A1W2PPZ6 126 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 TCAF2A6NFQ2 919 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 PDGFAP04085 211 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 PRKCSHP14314 528 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-207ENST00000551486 KRTAP1-1Q07627 177 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 ELOAQ14241 798 aaKnown RBP3.7□□□□□ -1.82
LIMA1-207ENST00000551486 ALKBH2Q6NS38 261 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 PRR23BQ6ZRT6 265 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 CAPN12Q6ZSI9 719 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 CYFIP1Q7L576 1253 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 FNBP4Q8N3X1 1017 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-207ENST00000551486 ZNF777Q9ULD5 760 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-207ENST00000551486 CTNND2Q9UQB3 1225 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 JAG2Q9Y219 1238 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 AMOTL2Q9Y2J4 779 aa3.7□□□□□ -1.82
LIMA1-207ENST00000551486 RNGTTO60942 597 aaKnown RBP3.69□□□□□ -1.82
LIMA1-207ENST00000551486 ITIH2P19823 946 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 OXCT1P55809 520 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 AP3B2Q13367 1082 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 AAMPQ13685 434 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 KCNA10Q16322 511 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 ZNF423Q2M1K9 1284 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 SMYD4Q8IYR2 804 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-207ENST00000551486 CCDC120Q96HB5 630 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 NSUN3Q9H649 340 aaKnown RBP3.69□□□□□ -1.82
LIMA1-207ENST00000551486 SSU72Q9NP77 194 aaKnown RBP3.69□□□□□ -1.82
LIMA1-207ENST00000551486 PRDM7Q9NQW5 492 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 GTF2IRD1Q9UHL9 959 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 PCOLCE2Q9UKZ9 415 aa3.69□□□□□ -1.82
LIMA1-207ENST00000551486 A6NHS1 94 aa3.68□□□□□ -1.82
LIMA1-207ENST00000551486 TNFRSF21O75509 655 aa3.68□□□□□ -1.82
LIMA1-207ENST00000551486 CTSBP07858 339 aa3.68□□□□□ -1.82
LIMA1-207ENST00000551486 USP5P45974 858 aa3.68□□□□□ -1.82
LIMA1-207ENST00000551486 ID3Q02535 119 aa3.68□□□□□ -1.82
LIMA1-207ENST00000551486 CLUAP1Q96AJ1 413 aa3.68□□□□□ -1.82
LIMA1-207ENST00000551486 DIRC2Q96SL1 478 aa3.68□□□□□ -1.82
LIMA1-207ENST00000551486 WDR18Q9BV38 432 aa3.68□□□□□ -1.82
LIMA1-207ENST00000551486 DUSP23Q9BVJ7 150 aa3.68□□□□□ -1.82
LIMA1-207ENST00000551486 METTL12A8MUP2 240 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.67□□□□□ -1.82
LIMA1-207ENST00000551486 NUAK1O60285 661 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 HOXA5P20719 270 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 FAM69CQ0P6D2 419 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 CFAP70Q5T0N1 1121 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 FYB2Q5VWT5 728 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 ATG14Q6ZNE5 492 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 ERICH6Q7L0X2 663 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 TNKS2Q9H2K2 1166 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 LIN7BQ9HAP6 207 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 DCP1AQ9NPI6 582 aaPredicted RBP3.67□□□□□ -1.82
LIMA1-207ENST00000551486 PPP1R9AQ9ULJ8 1098 aa3.67□□□□□ -1.82
LIMA1-207ENST00000551486 PLAGL2Q9UPG8 496 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms