RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 COL9A2Q14055 689 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-205ENST00000550592 MPRIPQ6WCQ1 1025 aa7.66□□□□□ -1.18
LIMA1-205ENST00000550592 LINC00114Q6XXX2 140 aa7.66□□□□□ -1.18
LIMA1-205ENST00000550592 SLITRK4Q8IW52 837 aa7.66□□□□□ -1.18
LIMA1-205ENST00000550592 UBXN4Q92575 508 aa7.66□□□□□ -1.18
LIMA1-205ENST00000550592 JARID2Q92833 1246 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-205ENST00000550592 GAL3ST3Q96A11 431 aa7.66□□□□□ -1.18
LIMA1-205ENST00000550592 CORO1BQ9BR76 489 aa7.66□□□□□ -1.18
LIMA1-205ENST00000550592 KRT82Q9NSB4 513 aa7.66□□□□□ -1.18
LIMA1-205ENST00000550592 FGRP09769 529 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 ATP2B1P20020 1258 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 CD68P34810 354 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-205ENST00000550592 PTPN11Q06124 597 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-205ENST00000550592 APOBRQ0VD83 1088 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 SEPT6Q14141 434 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 TRAPPC3LQ5T215 181 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 MAP1SQ66K74 1059 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-205ENST00000550592 MCF2L2Q86YR7 1114 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 SVOPQ8N4V2 548 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 DCAF11Q8TEB1 546 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 KCNB2Q92953 911 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 ARMC5Q96C12 935 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 RRAGCQ9HB90 399 aa7.65□□□□□ -1.18
LIMA1-205ENST00000550592 PPP1R1BQ9UD71 204 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-205ENST00000550592 WIPF1O43516 503 aa7.64□□□□□ -1.19
LIMA1-205ENST00000550592 ECEL1O95672 775 aa7.64□□□□□ -1.19
LIMA1-205ENST00000550592 SOX9P48436 509 aa7.64□□□□□ -1.19
LIMA1-205ENST00000550592 MPP2Q14168 576 aa7.64□□□□□ -1.19
LIMA1-205ENST00000550592 DIEXFQ68CQ4 756 aaKnown RBP7.64□□□□□ -1.19
LIMA1-205ENST00000550592 FBXO11Q86XK2 927 aa7.64□□□□□ -1.19
LIMA1-205ENST00000550592 NKD1Q969G9 470 aa7.64□□□□□ -1.19
LIMA1-205ENST00000550592 TRIM11Q96F44 468 aa7.64□□□□□ -1.19
LIMA1-205ENST00000550592 CCDC86Q9H6F5 360 aaKnown RBP7.64□□□□□ -1.19
LIMA1-205ENST00000550592 GINM1Q9NU53 330 aa7.64□□□□□ -1.19
LIMA1-205ENST00000550592 EFR3BQ9Y2G0 817 aa7.64□□□□□ -1.19
LIMA1-205ENST00000550592 A0A0A0MRY4 1105 aa7.63□□□□□ -1.19
LIMA1-205ENST00000550592 ADAM11O75078 769 aa7.63□□□□□ -1.19
LIMA1-205ENST00000550592 NLRP12P59046 1061 aa7.63□□□□□ -1.19
LIMA1-205ENST00000550592 SNRPNP63162 240 aaKnown RBP7.63□□□□□ -1.19
LIMA1-205ENST00000550592 FOXD4L6Q3SYB3 417 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-205ENST00000550592 FOXD4L3Q6VB84 417 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-205ENST00000550592 FMR1NBQ8N0W7 255 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-205ENST00000550592 FBXO27Q8NI29 283 aa7.63□□□□□ -1.19
LIMA1-205ENST00000550592 GPBAR1Q8TDU6 330 aa7.63□□□□□ -1.19
LIMA1-205ENST00000550592 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIMA1-205ENST00000550592 ZC3H12CQ9C0D7 883 aaKnown RBP7.63□□□□□ -1.19
LIMA1-205ENST00000550592 KCNK4Q9NYG8 393 aa7.63□□□□□ -1.19
LIMA1-205ENST00000550592 LOC100289279A0A1B0GTE1 492 aa7.62□□□□□ -1.19
LIMA1-205ENST00000550592 DLL1O00548 723 aa7.62□□□□□ -1.19
LIMA1-205ENST00000550592 DDX3YO15523 660 aaKnown RBP7.62□□□□□ -1.19
LIMA1-205ENST00000550592 ZNF862O60290 1169 aa7.62□□□□□ -1.19
LIMA1-205ENST00000550592 CTSBP07858 339 aa7.62□□□□□ -1.19
LIMA1-205ENST00000550592 NASPP49321 788 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-205ENST00000550592 RPL6Q02878 288 aaKnown RBP7.62□□□□□ -1.19
LIMA1-205ENST00000550592 CWF19L2Q2TBE0 894 aaKnown RBP7.62□□□□□ -1.19
LIMA1-205ENST00000550592 SEZ6Q53EL9 994 aa7.62□□□□□ -1.19
LIMA1-205ENST00000550592 SYNGAP1Q96PV0 1343 aa7.61□□□□□ -1.19
LIMA1-205ENST00000550592 PIK3R2O00459 728 aa7.61□□□□□ -1.19
LIMA1-205ENST00000550592 GNB5O14775 395 aa7.61□□□□□ -1.19
LIMA1-205ENST00000550592 TLR3O15455 904 aaKnown RBP7.61□□□□□ -1.19
LIMA1-205ENST00000550592 RAC1P63000 192 aa7.61□□□□□ -1.19
LIMA1-205ENST00000550592 RBL2Q08999 1139 aa7.61□□□□□ -1.19
LIMA1-205ENST00000550592 HP1BP3Q5SSJ5 553 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-205ENST00000550592 REC114Q7Z4M0 266 aa7.61□□□□□ -1.19
LIMA1-205ENST00000550592 PLVAPQ9BX97 442 aa7.61□□□□□ -1.19
LIMA1-205ENST00000550592 USP26Q9BXU7 913 aa7.61□□□□□ -1.19
LIMA1-205ENST00000550592 SPDYE3A6NKU9 549 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 GFRA2O00451 464 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 BPNT1O95861 308 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 DLGAP3O95886 979 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 SELPP16109 830 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 LORP23490 312 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-205ENST00000550592 GTF2F1P35269 517 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMA1-205ENST00000550592 HNRNPUQ00839 825 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMA1-205ENST00000550592 KIF4BQ2VIQ3 1234 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-205ENST00000550592 REXO1Q8N1G1 1221 aaKnown RBP7.6□□□□□ -1.19
LIMA1-205ENST00000550592 DHX38Q92620 1227 aaKnown RBP7.6□□□□□ -1.19
LIMA1-205ENST00000550592 WDR89Q96FK6 387 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-205ENST00000550592 MKL2Q9ULH7 1088 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 STRIP2Q9ULQ0 834 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 PCDHA4Q9UN74 947 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 SNCAIPQ9Y6H5 919 aa7.6□□□□□ -1.19
LIMA1-205ENST00000550592 LIG1P18858 919 aa7.59□□□□□ -1.19
LIMA1-205ENST00000550592 ZNF165P49910 485 aa7.59□□□□□ -1.19
LIMA1-205ENST00000550592 PDE3AQ14432 1141 aa7.59□□□□□ -1.19
LIMA1-205ENST00000550592 EXOSC6Q5RKV6 272 aaKnown RBP7.59□□□□□ -1.19
LIMA1-205ENST00000550592 ACSBG1Q96GR2 724 aa7.59□□□□□ -1.19
LIMA1-205ENST00000550592 BRMS1Q9HCU9 246 aa7.59□□□□□ -1.19
LIMA1-205ENST00000550592 MEGF11A6BM72 1044 aa7.58□□□□□ -1.2
LIMA1-205ENST00000550592 AOC2O75106 756 aa7.58□□□□□ -1.2
LIMA1-205ENST00000550592 SLFN14P0C7P3 912 aa7.58□□□□□ -1.2
LIMA1-205ENST00000550592 TRIM28Q13263 835 aaKnown RBP7.58□□□□□ -1.2
LIMA1-205ENST00000550592 INPP5AQ14642 412 aa7.58□□□□□ -1.2
LIMA1-205ENST00000550592 DUOXA2Q1HG44 320 aa7.58□□□□□ -1.2
LIMA1-205ENST00000550592 IGF2-ASQ6U949 168 aa7.58□□□□□ -1.2
LIMA1-205ENST00000550592 EHMT1Q9H9B1 1298 aa7.58□□□□□ -1.2
LIMA1-205ENST00000550592 PCDHGC5Q9Y5F6 944 aa7.58□□□□□ -1.2
LIMA1-205ENST00000550592 TACC3Q9Y6A5 838 aa7.58□□□□□ -1.2
LIMA1-205ENST00000550592 SSBP05455 408 aaKnown RBP eCLIP7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms