RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 ARFGAP3Q9NP61 516 aa10.72□□□□□ -0.69
PTCH1-220ENST00000550136 CPDO75976 1380 aa10.71□□□□□ -0.69
PTCH1-220ENST00000550136 SRGAP3O43295 1099 aa10.71□□□□□ -0.69
PTCH1-220ENST00000550136 FESP07332 822 aa10.71□□□□□ -0.69
PTCH1-220ENST00000550136 GJA8P48165 433 aa10.71□□□□□ -0.69
PTCH1-220ENST00000550136 FOXD4Q12950 439 aaPredicted RBP10.71□□□□□ -0.69
PTCH1-220ENST00000550136 RRP12Q5JTH9 1297 aaKnown RBP10.71□□□□□ -0.69
PTCH1-220ENST00000550136 LRRN4CLQ8ND94 238 aa10.71□□□□□ -0.69
PTCH1-220ENST00000550136 NGDNQ8NEJ9 315 aaKnown RBP10.71□□□□□ -0.69
PTCH1-220ENST00000550136 UNC45AQ9H3U1 944 aa10.71□□□□□ -0.69
PTCH1-220ENST00000550136 LRRC37A3O60309 1634 aa10.71□□□□□ -0.7
PTCH1-220ENST00000550136 SPDYE3A6NKU9 549 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 USP27XA6NNY8 438 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 OPA1O60313 960 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 POTEIP0CG38 1075 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 HSPA6P17066 643 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 NAA25Q14CX7 972 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 C16orf87Q6PH81 154 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 ELOA2Q8IYF1 753 aaPredicted RBP10.7□□□□□ -0.7
PTCH1-220ENST00000550136 ARL10Q8N8L6 244 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 MRFAP1Q9Y605 127 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 TUBB4AP04350 444 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 NBPF7P0C2Y1 421 aaPredicted RBP10.7□□□□□ -0.7
PTCH1-220ENST00000550136 INPP5BP32019 993 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 CDR1P51861 262 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 TMED1Q13445 227 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 SAFB2Q14151 953 aaKnown RBP eCLIP10.7□□□□□ -0.7
PTCH1-220ENST00000550136 KCNB1Q14721 858 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 IQCF2Q8IXL9 164 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 CACTINQ8WUQ7 758 aaKnown RBP10.7□□□□□ -0.7
PTCH1-220ENST00000550136 TEKT1Q969V4 418 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 EPAS1Q99814 870 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 ATP6V0A4Q9HBG4 840 aa10.7□□□□□ -0.7
PTCH1-220ENST00000550136 ATXN2Q99700 1313 aaKnown RBP10.7□□□□□ -0.7
PTCH1-220ENST00000550136 ENO4A6NNW6 628 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 MAP2K7O14733 419 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 SASH1O94885 1247 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 MAP3K9P80192 1104 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 TXNRD1Q16881 649 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 CWF19L1Q69YN2 538 aaKnown RBP10.69□□□□□ -0.7
PTCH1-220ENST00000550136 ARHGAP22Q7Z5H3 698 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 MIPOL1Q8TD10 442 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 LMBR1Q8WVP7 490 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 CHAMP1Q96JM3 812 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 FAM169AQ9Y6X4 670 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 SHTN1A0MZ66 631 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 FRMD3A2A2Y4 597 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 EFCAB8A8MWE9 144 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 VCAM1P19320 739 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 MAGEA10P43363 369 aaPredicted RBP10.69□□□□□ -0.7
PTCH1-220ENST00000550136 MNX1P50219 401 aaPredicted RBP10.69□□□□□ -0.7
PTCH1-220ENST00000550136 PRPF4BQ13523 1007 aaKnown RBP10.69□□□□□ -0.7
PTCH1-220ENST00000550136 INF2Q27J81 1249 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 TTLL7Q6ZT98 887 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 KIAA0825Q8IV33 1275 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 SPATA7Q9P0W8 599 aa10.69□□□□□ -0.7
PTCH1-220ENST00000550136 APOBRQ0VD83 1088 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 PTF1AQ7RTS3 328 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 CEP112Q8N8E3 955 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 RMDN2Q96LZ7 410 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 TMEM98Q9Y2Y6 226 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 CRB1P82279 1406 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 ITSN1Q15811 1721 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 TADA3O75528 432 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 FSBPO95073 299 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 COL5A2P05997 1499 aaPredicted RBP10.68□□□□□ -0.7
PTCH1-220ENST00000550136 FNTAP49354 379 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 WDR43Q15061 677 aaKnown RBP eCLIP10.68□□□□□ -0.7
PTCH1-220ENST00000550136 RBM26Q5T8P6 1007 aaKnown RBP10.68□□□□□ -0.7
PTCH1-220ENST00000550136 SLC30A9Q6PML9 568 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 APBB1IPQ7Z5R6 666 aaPredicted RBP10.68□□□□□ -0.7
PTCH1-220ENST00000550136 DRC7Q8IY82 874 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 CCAR2Q8N163 923 aaKnown RBP10.68□□□□□ -0.7
PTCH1-220ENST00000550136 MAGEC3Q8TD91 643 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 CCDC114Q96M63 670 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 OSBPL9Q96SU4 736 aa10.68□□□□□ -0.7
PTCH1-220ENST00000550136 F8VZ95 297 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 PDLIM1O00151 329 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 EZRP15311 586 aaKnown RBP10.67□□□□□ -0.7
PTCH1-220ENST00000550136 G3BP1Q13283 466 aaKnown RBP eCLIP10.67□□□□□ -0.7
PTCH1-220ENST00000550136 DDB1Q16531 1140 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 THEMIS2Q5TEJ8 643 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 MICALCLQ6ZW33 695 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 PLA2G4DQ86XP0 818 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 TMEM87AQ8NBN3 555 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 CNNM3Q8NE01 707 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 NUP133Q8WUM0 1156 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 POLR3CQ9BUI4 534 aaPredicted RBP10.67□□□□□ -0.7
PTCH1-220ENST00000550136 USP26Q9BXU7 913 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 RTEL1Q9NZ71 1219 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 ABCF2Q9UG63 623 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 NRBP1Q9UHY1 535 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 TESPA1A2RU30 521 aaPredicted RBP10.67□□□□□ -0.7
PTCH1-220ENST00000550136 WASLO00401 505 aaPredicted RBP10.67□□□□□ -0.7
PTCH1-220ENST00000550136 CYP11B2P19099 503 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 GCLCP48506 637 aaPredicted RBP10.67□□□□□ -0.7
PTCH1-220ENST00000550136 TRPC1P48995 793 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 CFAP70Q5T0N1 1121 aa10.67□□□□□ -0.7
PTCH1-220ENST00000550136 ZGPATQ8N5A5 531 aaKnown RBP10.67□□□□□ -0.7
PTCH1-220ENST00000550136 SAMD3Q8N6K7 520 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms