RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 GAKO14976 1311 aa16.66■□□□□ 0.26
PTCH1-213ENST00000546820 TRIM6-TRIM34B2RNG4 842 aa16.65■□□□□ 0.26
PTCH1-213ENST00000546820 ZFYP08048 801 aaPredicted RBP16.65■□□□□ 0.26
PTCH1-213ENST00000546820 PDE4AP27815 886 aa16.65■□□□□ 0.26
PTCH1-213ENST00000546820 BTDP43251 543 aa16.65■□□□□ 0.26
PTCH1-213ENST00000546820 SPDYE2Q495Y8 402 aa16.65■□□□□ 0.26
PTCH1-213ENST00000546820 FKBP1CQ5VVH2 108 aa16.65■□□□□ 0.26
PTCH1-213ENST00000546820 USP48Q86UV5 1035 aa16.65■□□□□ 0.26
PTCH1-213ENST00000546820 TICAM2Q86XR7 235 aa16.65■□□□□ 0.26
PTCH1-213ENST00000546820 VEZTQ9HBM0 779 aa16.65■□□□□ 0.26
PTCH1-213ENST00000546820 CLRN2A0PK11 232 aa16.64■□□□□ 0.25
PTCH1-213ENST00000546820 PDE6AP16499 860 aa16.64■□□□□ 0.25
PTCH1-213ENST00000546820 PPP4CP60510 307 aa16.64■□□□□ 0.25
PTCH1-213ENST00000546820 CDC42EP5Q6NZY7 148 aa16.64■□□□□ 0.25
PTCH1-213ENST00000546820 ZNF384Q8TF68 577 aa16.64■□□□□ 0.25
PTCH1-213ENST00000546820 RILPL2Q969X0 211 aa16.64■□□□□ 0.25
PTCH1-213ENST00000546820 FSD1Q9BTV5 496 aa16.64■□□□□ 0.25
PTCH1-213ENST00000546820 MYH2Q9UKX2 1941 aa16.64■□□□□ 0.25
PTCH1-213ENST00000546820 ASTN2O75129 1339 aaPredicted RBP16.64■□□□□ 0.25
PTCH1-213ENST00000546820 ADD2P35612 726 aa16.63■□□□□ 0.25
PTCH1-213ENST00000546820 UBE3CQ15386 1083 aa16.63■□□□□ 0.25
PTCH1-213ENST00000546820 PPP2R3BQ9Y5P8 575 aa16.63■□□□□ 0.25
PTCH1-213ENST00000546820 ZNF532Q9HCE3 1301 aa16.63■□□□□ 0.25
PTCH1-213ENST00000546820 RNF113AO15541 343 aaKnown RBP16.62■□□□□ 0.25
PTCH1-213ENST00000546820 ITGBL1O95965 494 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-213ENST00000546820 GLIS2Q9BZE0 524 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-213ENST00000546820 DEFB129Q9H1M3 183 aa16.62■□□□□ 0.25
PTCH1-213ENST00000546820 AATFQ9NY61 560 aaKnown RBP eCLIP16.62■□□□□ 0.25
PTCH1-213ENST00000546820 ADAMTSL1Q8N6G6 1762 aa16.61■□□□□ 0.25
PTCH1-213ENST00000546820 POLR2AP24928 1970 aaKnown RBP16.61■□□□□ 0.25
PTCH1-213ENST00000546820 MAGEB6P1A0A0J9YX57 407 aa16.61■□□□□ 0.25
PTCH1-213ENST00000546820 TCP10L2B9ZVM9 353 aa16.61■□□□□ 0.25
PTCH1-213ENST00000546820 FAM83AQ86UY5 434 aa16.61■□□□□ 0.25
PTCH1-213ENST00000546820 TCRBV5S4A2TA0A5A2 114 aa16.6■□□□□ 0.25
PTCH1-213ENST00000546820 NF2P35240 595 aa16.6■□□□□ 0.25
PTCH1-213ENST00000546820 C1QTNF8P60827 252 aa16.6■□□□□ 0.25
PTCH1-213ENST00000546820 RASA3Q14644 834 aa16.6■□□□□ 0.25
PTCH1-213ENST00000546820 SUPT20HL1Q3ZLR7 823 aa16.6■□□□□ 0.25
PTCH1-213ENST00000546820 TTC22Q5TAA0 569 aa16.6■□□□□ 0.25
PTCH1-213ENST00000546820 TEX11Q8IYF3 940 aa16.6■□□□□ 0.25
PTCH1-213ENST00000546820 MIGA1Q8NAN2 632 aa16.6■□□□□ 0.25
PTCH1-213ENST00000546820 IDI2Q9BXS1 227 aa16.6■□□□□ 0.25
PTCH1-213ENST00000546820 MYO5AQ9Y4I1 1855 aaKnown RBP16.6■□□□□ 0.25
PTCH1-213ENST00000546820 ADM5C9JUS6 153 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 HIP1O00291 1037 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 ENTPD3O75355 529 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 NPM3O75607 178 aaKnown RBP16.59■□□□□ 0.25
PTCH1-213ENST00000546820 CACNB3P54284 484 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 RHBDL3P58872 404 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 ADGRA1Q86SQ6 560 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 FAM151AQ8WW52 585 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 APPBP2Q92624 585 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 HOOK2Q96ED9 719 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 DOCK2Q92608 1830 aa16.59■□□□□ 0.25
PTCH1-213ENST00000546820 TRAF5O00463 557 aa16.58■□□□□ 0.24
PTCH1-213ENST00000546820 DYNLL1P63167 89 aaKnown RBP16.58■□□□□ 0.24
PTCH1-213ENST00000546820 SH3RF3Q8TEJ3 882 aaPredicted RBP16.58■□□□□ 0.24
PTCH1-213ENST00000546820 AIDAQ96BJ3 306 aa16.58■□□□□ 0.24
PTCH1-213ENST00000546820 CDCA5Q96FF9 252 aa16.58■□□□□ 0.24
PTCH1-213ENST00000546820 CRNKL1Q9BZJ0 848 aaKnown RBP16.58■□□□□ 0.24
PTCH1-213ENST00000546820 SCAF8Q9UPN6 1271 aaKnown RBP16.58■□□□□ 0.24
PTCH1-213ENST00000546820 ECM29Q5VYK3 1845 aa16.58■□□□□ 0.24
PTCH1-213ENST00000546820 MAST2Q6P0Q8 1798 aa16.57■□□□□ 0.24
PTCH1-213ENST00000546820 PASKQ96RG2 1323 aa16.57■□□□□ 0.24
PTCH1-213ENST00000546820 WDHD1O75717 1129 aaPredicted RBP16.57■□□□□ 0.24
PTCH1-213ENST00000546820 USP5P45974 858 aa16.57■□□□□ 0.24
PTCH1-213ENST00000546820 RGS3P49796 1198 aa16.57■□□□□ 0.24
PTCH1-213ENST00000546820 TCP10Q12799 353 aa16.57■□□□□ 0.24
PTCH1-213ENST00000546820 PICALMQ13492 652 aa16.57■□□□□ 0.24
PTCH1-213ENST00000546820 ZNF408Q9H9D4 720 aa16.57■□□□□ 0.24
PTCH1-213ENST00000546820 CELF2O95319 508 aaKnown RBP16.56■□□□□ 0.24
PTCH1-213ENST00000546820 SDSP20132 328 aa16.56■□□□□ 0.24
PTCH1-213ENST00000546820 APLP1P51693 650 aa16.56■□□□□ 0.24
PTCH1-213ENST00000546820 NFIAQ12857 509 aa16.56■□□□□ 0.24
PTCH1-213ENST00000546820 PRAMEF18Q5VWM3 479 aa16.56■□□□□ 0.24
PTCH1-213ENST00000546820 ZSCAN29Q8IWY8 852 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-213ENST00000546820 C2orf69Q8N8R5 385 aa16.56■□□□□ 0.24
PTCH1-213ENST00000546820 TGFBRAP1Q8WUH2 860 aa16.56■□□□□ 0.24
PTCH1-213ENST00000546820 DDRGK1Q96HY6 314 aa16.56■□□□□ 0.24
PTCH1-213ENST00000546820 RIOK1Q9BRS2 568 aaKnown RBP16.56■□□□□ 0.24
PTCH1-213ENST00000546820 TMEM39BQ9GZU3 492 aa16.56■□□□□ 0.24
PTCH1-213ENST00000546820 FAM198AQ9UFP1 575 aa16.56■□□□□ 0.24
PTCH1-213ENST00000546820 RFX7Q2KHR2 1363 aa16.55■□□□□ 0.24
PTCH1-213ENST00000546820 TMEM88BA6NKF7 163 aa16.55■□□□□ 0.24
PTCH1-213ENST00000546820 PPP1R12BO60237 982 aaPredicted RBP16.55■□□□□ 0.24
PTCH1-213ENST00000546820 MBD4O95243 580 aa16.55■□□□□ 0.24
PTCH1-213ENST00000546820 GNAT2P19087 354 aa16.55■□□□□ 0.24
PTCH1-213ENST00000546820 ZMYM1Q5SVZ6 1142 aa16.55■□□□□ 0.24
PTCH1-213ENST00000546820 PUS7LQ9H0K6 701 aaKnown RBP16.55■□□□□ 0.24
PTCH1-213ENST00000546820 ARMT1Q9H993 441 aa16.55■□□□□ 0.24
PTCH1-213ENST00000546820 HELLSQ9NRZ9 838 aa16.55■□□□□ 0.24
PTCH1-213ENST00000546820 DIAPH3Q9NSV4 1193 aa16.55■□□□□ 0.24
PTCH1-213ENST00000546820 CNTNAP1P78357 1384 aa16.54■□□□□ 0.24
PTCH1-213ENST00000546820 GSPT1P15170 499 aaKnown RBP16.54■□□□□ 0.24
PTCH1-213ENST00000546820 FKBP1BP68106 108 aa16.54■□□□□ 0.24
PTCH1-213ENST00000546820 SLFNL1Q499Z3 407 aa16.54■□□□□ 0.24
PTCH1-213ENST00000546820 NBPF12Q5TAG4 269 aaPredicted RBP16.54■□□□□ 0.24
PTCH1-213ENST00000546820 DLK2Q6UY11 383 aa16.54■□□□□ 0.24
PTCH1-213ENST00000546820 OSBP2Q969R2 916 aa16.54■□□□□ 0.24
PTCH1-213ENST00000546820 DHX36Q9H2U1 1008 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms