RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 PAG1Q9NWQ8 432 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 NUB1Q9Y5A7 615 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 RBM8AQ9Y5S9 174 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 V9GYY5 206 aaPredicted RBP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 AKAP11Q9UKA4 1901 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 C4AP0C0L4 1744 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 C4BP0C0L5 1744 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 ANKRD18BA2A2Z9 1011 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 IPO7O95373 1038 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 PAX7P23759 505 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 SF3A1Q15459 793 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 ADCK5Q3MIX3 580 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 FAM182BQ5T319 152 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 USPL1Q5W0Q7 1092 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 AKAP2Q9Y2D5 859 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 CTAGE5O15320 804 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 FOXD4Q12950 439 aaPredicted RBP9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 COL9A3Q14050 684 aaPredicted RBP9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 RC3H1Q5TC82 1133 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 CREB3L3Q68CJ9 461 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 PRPF40BQ6NWY9 871 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 CLEC4GQ6UXB4 293 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 KRT222Q8N1A0 295 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 TM6SF1Q9BZW5 370 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 ANAPC4Q9UJX5 808 aa9.28□□□□□ -0.92
PDLIM5-221ENST00000542407 SLC27A2O14975 620 aa9.27□□□□□ -0.92
PDLIM5-221ENST00000542407 NPHP1O15259 732 aa9.27□□□□□ -0.92
PDLIM5-221ENST00000542407 SCARF1Q14162 830 aa9.27□□□□□ -0.92
PDLIM5-221ENST00000542407 DRC7Q8IY82 874 aa9.27□□□□□ -0.92
PDLIM5-221ENST00000542407 JMYQ8N9B5 988 aa9.27□□□□□ -0.92
PDLIM5-221ENST00000542407 SEC62Q99442 399 aaKnown RBP9.27□□□□□ -0.92
PDLIM5-221ENST00000542407 ST7Q9NRC1 585 aa9.27□□□□□ -0.92
PDLIM5-221ENST00000542407 TAF6LQ9Y6J9 622 aa9.27□□□□□ -0.92
PDLIM5-221ENST00000542407 FGFR2P21802 821 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 PTGS1P23219 599 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 SLFNL1Q499Z3 407 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 LDHAL6AQ6ZMR3 332 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 AMIGO3Q86WK7 504 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 MTA3Q9BTC8 594 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 ZSWIM6Q9HCJ5 1215 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 NIP7Q9Y221 180 aaKnown RBP eCLIP9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 TESPA1A2RU30 521 aaPredicted RBP9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 KIF3CO14782 793 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 IFIT1P09914 478 aaKnown RBP9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 TSGA10IPQ3SY00 556 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 ZMYM1Q5SVZ6 1142 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 ZNF280DQ6N043 979 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 GIMAP6Q6P9H5 292 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 CCDC129Q6ZRS4 1044 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 RUFY3Q7L099 469 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 CCDC112Q8NEF3 446 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 KIF18AQ8NI77 898 aa9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 ZNF512BQ96KM6 892 aaPredicted RBP9.27□□□□□ -0.93
PDLIM5-221ENST00000542407 GOLGA6L6A8MZA4 724 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 CPA1P15085 419 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 C11orf91Q3C1V1 193 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 METTL24Q5JXM2 366 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 CCDC183Q5T5S1 534 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 RBM26Q5T8P6 1007 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 TMCO4Q5TGY1 634 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 SMIM5Q71RC9 77 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 INTS4Q96HW7 963 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 CXorf56Q9H5V9 222 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 PDE8BO95263 885 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 AK2P54819 239 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 MCMDC2Q4G0Z9 681 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 MEX3CQ5U5Q3 659 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 FAM212AQ96EL1 285 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 NUCKS1Q9H1E3 243 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 TMX1Q9H3N1 280 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 SEC31BQ9NQW1 1179 aa9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 MORC2Q9Y6X9 1032 aaPredicted RBP9.26□□□□□ -0.93
PDLIM5-221ENST00000542407 AP5Z1O43299 807 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 RPS6KA4O75676 772 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 TPM3P06753 285 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 LIG1P18858 919 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 CASTP20810 708 aaKnown RBP9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 SWT1Q5T5J6 900 aaKnown RBP9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 C3orf67Q6ZVT6 689 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 RETREG2Q8NC44 543 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 HELLSQ9NRZ9 838 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 TRPC5Q9UL62 973 aaPredicted RBP9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 ZNF652Q9Y2D9 606 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 MROH5Q6ZUA9 1318 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 BRWD3Q6RI45 1802 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 MCAMP43121 646 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 RHBDL3P58872 404 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 LRMPQ12912 555 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 CCDC158Q5M9N0 1113 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 VPS53Q5VIR6 699 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 SEPT12Q8IYM1 358 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 JAKMIP1Q96N16 626 aaKnown RBP9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 CNNM1Q9NRU3 951 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 MYH7P12883 1935 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 MAST3O60307 1309 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 DOCK2Q92608 1830 aa9.25□□□□□ -0.93
PDLIM5-221ENST00000542407 RNF113AO15541 343 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 TPD52L1Q16890 204 aaPredicted RBP9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 TTC39AQ5SRH9 613 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms