RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SPDYE3A6NKU9 549 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 CAVIN2O95810 425 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 PDHBP11177 359 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 TPP2P29144 1249 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-214ENST00000540539 ALDH1B1P30837 517 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 SMTNP53814 917 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 FILIP1LQ4L180 1135 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 TCP11Q8WWU5 503 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 EPAS1Q99814 870 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 EHD4Q9H223 541 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 CENPHQ9H3R5 247 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 RABEP2Q9H5N1 569 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 CDHR2Q9BYE9 1310 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 SFPQP23246 707 aaKnown RBP eCLIP10.79□□□□□ -0.68
CLIP1-214ENST00000540539 IRAK1P51617 712 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 FAM228AQ86W67 206 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 CERKQ8TCT0 537 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 BCAS4Q8TDM0 211 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 DDX17Q92841 729 aaKnown RBP10.79□□□□□ -0.68
CLIP1-214ENST00000540539 MPHOSPH8Q99549 860 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 STK31Q9BXU1 1019 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 GGNBP2Q9H3C7 697 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 SLC39A2Q9NP94 309 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 LRRIQ3A6PVS8 624 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-214ENST00000540539 ZBTB7BO15156 539 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-214ENST00000540539 ERLIN1O75477 346 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 MYL1P05976 194 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 E2F5Q15329 346 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 CCDC178Q5BJE1 867 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 CCDC181Q5TID7 509 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 NME9Q86XW9 330 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 PROM2Q8N271 834 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 WDR24Q96S15 920 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 DDX19AQ9NUU7 478 aaKnown RBP10.79□□□□□ -0.68
CLIP1-214ENST00000540539 IMPACTQ9P2X3 320 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 NPHP3Q7Z494 1330 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 NSD2O96028 1365 aa10.79□□□□□ -0.68
CLIP1-214ENST00000540539 TOM1O60784 492 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 SYF2O95926 243 aaKnown RBP10.78□□□□□ -0.68
CLIP1-214ENST00000540539 ZBED6P86452 979 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 SNCBQ16143 134 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 CCDC40Q4G0X9 1142 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 CAPRIN2Q6IMN6 1127 aaKnown RBP10.78□□□□□ -0.68
CLIP1-214ENST00000540539 KRT28Q7Z3Y7 464 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 SMARCC1Q92922 1105 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-214ENST00000540539 LZTS2Q9BRK4 669 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 RANBP17Q9H2T7 1088 aaKnown RBP10.78□□□□□ -0.68
CLIP1-214ENST00000540539 ZSWIM4Q9H7M6 989 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 BATF3Q9NR55 127 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 SAMM50Q9Y512 469 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 TTC21AQ8NDW8 1320 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 SHTN1A0MZ66 631 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 FESP07332 822 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 FAM177A1Q8N128 213 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-214ENST00000540539 IGSF22Q8N9C0 903 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 MTMR6Q9Y217 621 aa10.78□□□□□ -0.68
CLIP1-214ENST00000540539 GOLGA6CA6NDK9 693 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 GOLGA6BA6NDN3 693 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 MEFVO15553 781 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-214ENST00000540539 KIAA0754O94854 1291 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 GOLGA6DP0CG33 693 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 TRIM42Q8IWZ5 723 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 FAM81AQ8TBF8 368 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 GOLGA6AQ9NYA3 693 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 RGL1Q9NZL6 768 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 ZRANB1Q9UGI0 708 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 TPCN1Q9ULQ1 816 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 ANKRD26Q9UPS8 1709 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 PCDHGC5Q9Y5F6 944 aa10.77□□□□□ -0.68
CLIP1-214ENST00000540539 ROBO1Q9Y6N7 1651 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 UBAP1LF5GYI3 381 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 PES1O00541 588 aaKnown RBP10.77□□□□□ -0.69
CLIP1-214ENST00000540539 AHCYL1O43865 530 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 MAGEA10P43363 369 aaPredicted RBP10.77□□□□□ -0.69
CLIP1-214ENST00000540539 AARSP49588 968 aaKnown RBP eCLIP10.77□□□□□ -0.69
CLIP1-214ENST00000540539 RASA3Q14644 834 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 HDGFL1Q5TGJ6 251 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 CWF19L1Q69YN2 538 aaKnown RBP10.77□□□□□ -0.69
CLIP1-214ENST00000540539 MIS18BP1Q6P0N0 1132 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 SLC30A9Q6PML9 568 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 MSANTD4Q8NCY6 345 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 MAGEC3Q8TD91 643 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 NUP133Q8WUM0 1156 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 DHX58Q96C10 678 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 YIPF3Q9GZM5 350 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 SLC40A1Q9NP59 571 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 GRIN2DO15399 1336 aa10.77□□□□□ -0.69
CLIP1-214ENST00000540539 TRPM3Q9HCF6 1732 aaPredicted RBP10.77□□□□□ -0.69
CLIP1-214ENST00000540539 VWA3AA6NCI4 1184 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 CHMP4BP1P59074 171 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 MFN1Q8IWA4 741 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 DHX40Q8IX18 779 aaKnown RBP10.76□□□□□ -0.69
CLIP1-214ENST00000540539 BICD1Q96G01 975 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 RBM17Q96I25 401 aaKnown RBP10.76□□□□□ -0.69
CLIP1-214ENST00000540539 RSRC1Q96IZ7 334 aaKnown RBP10.76□□□□□ -0.69
CLIP1-214ENST00000540539 NAT10Q9H0A0 1025 aaKnown RBP10.76□□□□□ -0.69
CLIP1-214ENST00000540539 VCPKMTQ9H867 229 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 PIK3C2AO00443 1686 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 BECN2A8MW95 431 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 NR1I2O75469 434 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms