RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 EP400Q96L91 3159 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 LARGE1O95461 756 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 SFPQP23246 707 aaKnown RBP eCLIP10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 SETQ01105 290 aaPredicted RBP10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 SKIDA1Q1XH10 827 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 API5Q9BZZ5 524 aaKnown RBP10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 VEZTQ9HBM0 779 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 KCPQ6ZWJ8 1503 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 MPHOSPH10O00566 681 aaKnown RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 A1BGP04217 495 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 ERCC3P19447 782 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 HSPA4P34932 840 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 TXLNAP40222 546 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 BEND6Q5SZJ8 279 aaPredicted RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 TSHZ3Q63HK5 1081 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 ISM2Q6H9L7 571 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 CEP85Q6P2H3 762 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 FERMT3Q86UX7 667 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 CCDC83Q8IWF9 413 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 DHX40Q8IX18 779 aaKnown RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 RPAP2Q8IXW5 612 aaPredicted RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 TEX11Q8IYF3 940 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 MSL3Q8N5Y2 521 aaKnown RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 CTCFLQ8NI51 663 aaPredicted RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 N4BP2L2Q92802 583 aaPredicted RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 CLIC6Q96NY7 704 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 DDX21Q9NR30 783 aaKnown RBP eCLIP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 ZBTB12Q9Y330 459 aaPredicted RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 CCP110O43303 1012 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 PHACTR2O75167 634 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 MAP3K9P80192 1104 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 ILDR1Q86SU0 546 aaPredicted RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 NBPF5PQ86XG9 351 aaPredicted RBP10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 ITFG2Q969R8 447 aa10.88□□□□□ -0.67
CTNNA1-243ENST00000540387 ITGB4P16144 1822 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 ANKRD33BA6NCL7 494 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 NBPF26B4DH59 902 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 GCFC2P16383 781 aaKnown RBP10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 AIMP1Q12904 312 aaKnown RBP10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 STX1AQ16623 288 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 NBPF14Q5TI25 921 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 NBPF15Q8N660 670 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 FAM71BQ8TC56 605 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 GOLGA1Q92805 767 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 DOT1LQ8TEK3 1739 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 LOC102724428A0A0B4J2F2 783 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 NRDCO43847 1150 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 SIK1P57059 783 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 TBC1D8BQ0IIM8 1120 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 SLC4A10Q6U841 1118 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 TMC6Q7Z403 805 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 FMNL3Q8IVF7 1028 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 HNRNPLLQ8WVV9 542 aaKnown RBP10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 SPATA32Q96LK8 384 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 FAM204AQ9H8W3 233 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 HYPKQ9NX55 129 aa10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 TFIP11Q9UBB9 837 aaKnown RBP10.87□□□□□ -0.67
CTNNA1-243ENST00000540387 TTC36A6NLP5 189 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 ECM2O94769 699 aaPredicted RBP10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 KCNQ4P56696 695 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 DDR1Q08345 913 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 FAM196AQ6ZSG2 479 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 LRP10Q7Z4F1 713 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 PRPF38AQ8NAV1 312 aaKnown RBP10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 BICD2Q8TD16 824 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 CCDC102AQ96A19 550 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 DDX11Q96FC9 970 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 SCAND2PQ9GZW5 306 aaPredicted RBP10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 MRFAP1Q9Y605 127 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 FAM169AQ9Y6X4 670 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 TUBGCP6Q96RT7 1819 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 PALLDQ8WX93 1383 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 PI4KAP2A4QPH2 592 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 HSP90B2PQ58FF3 399 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 COPS6Q7L5N1 327 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 PI4KAP1Q8N8J0 262 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 LEO1Q8WVC0 666 aaPredicted RBP10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 RILPL2Q969X0 211 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 CABS1Q96KC9 395 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 MPHOSPH8Q99549 860 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 TEX13AQ9BXU3 409 aaPredicted RBP10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 IL25Q9H293 177 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 SUGCTQ9HAC7 445 aa10.86□□□□□ -0.67
CTNNA1-243ENST00000540387 A0A087WWV3 80 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 NF2P35240 595 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 WWC2Q6AWC2 1192 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 CDC37L1Q7L3B6 337 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 FAM177A1Q8N128 213 aaPredicted RBP10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 SMARCC1Q92922 1105 aaPredicted RBP10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 ZKSCAN4Q969J2 545 aaPredicted RBP10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 PGBD1Q96JS3 809 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 TRIM6Q9C030 488 aaPredicted RBP10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 L1RE1Q9UN81 338 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 SNX14Q9Y5W7 946 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 STARD3NLO95772 234 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 CYP19A1P11511 503 aaPredicted RBP10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 ITPK1Q13572 414 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 ZC3H12AQ5D1E8 599 aaKnown RBP10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 AOPEPQ8N6M6 819 aa10.85□□□□□ -0.67
CTNNA1-243ENST00000540387 XAGE3Q8WTP9 111 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms