RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 RCOR1Q9UKL0 485 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 ZMYM6O95789 1325 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 SPATA31A1Q5TZJ5 1347 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 BAG3O95817 575 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 TRAPPC3LQ5T215 181 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 MYSM1Q5VVJ2 828 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 ZNF287Q9HBT7 754 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 CBX8Q9HC52 389 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 ABCC6O95255 1503 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 SNAP23O00161 211 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 ZNF512BQ96KM6 892 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-213ENST00000540338 RTL9Q8NET4 1388 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 AK9Q5TCS8 1911 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 HMGB2P26583 209 aaKnown RBP12.44□□□□□ -0.42
CLIP1-213ENST00000540338 USP54Q70EL1 1684 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 ERFEQ4G0M1 354 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 ADALQ6DHV7 355 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 ZNF444Q8N0Y2 327 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-213ENST00000540338 USP21Q9UK80 565 aa12.44□□□□□ -0.42
CLIP1-213ENST00000540338 UQCRHLA0A096LP55 91 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 UQCRHP07919 91 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 ARID4AP29374 1257 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-213ENST00000540338 MARCH10Q8NA82 808 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-213ENST00000540338 CALM1P0DP23 149 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 CALM2P0DP24 149 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 CALM3P0DP25 149 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 NOLC1Q14978 699 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLIP1-213ENST00000540338 APOA5Q6Q788 366 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 CCDC186Q7Z3E2 898 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 MB21D2Q8IYB1 491 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-213ENST00000540338 CBFA2T2O43439 604 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 TXLNAP40222 546 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 KCNQ4P56696 695 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 GSTO1P78417 241 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 PPARAQ07869 468 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 CCDC24Q8N4L8 307 aa12.43□□□□□ -0.42
CLIP1-213ENST00000540338 KIF5BP33176 963 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 RTEL1Q9NZ71 1219 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 TFCP2L1Q9NZI6 479 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 BCL9O00512 1426 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 DEXIO95424 95 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 PDLIM2Q96JY6 352 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 MARCH6O60337 910 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 NLRP5P59047 1200 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 ANKRD20A12PQ8NF67 263 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 WDR19Q8NEZ3 1342 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 SH2B2O14492 632 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-213ENST00000540338 KCNQ2O43526 872 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 ST5P78524 1137 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 AOPEPQ8N6M6 819 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 PCDHA7Q9UN72 937 aa12.42□□□□□ -0.42
CLIP1-213ENST00000540338 NEMFO60524 1076 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 CAMTA2O94983 1202 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 TPM1P09493 284 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 ST3GAL1Q11201 340 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 PPP2R5BQ15173 497 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 ISM2Q6H9L7 571 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 HOMER1Q86YM7 354 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 KAT14Q9H8E8 782 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 PRKAB2O43741 272 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 SDR42E1Q8WUS8 393 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 CCDC47Q96A33 483 aaKnown RBP12.41□□□□□ -0.42
CLIP1-213ENST00000540338 FTOQ9C0B1 505 aaKnown RBP eCLIP12.41□□□□□ -0.42
CLIP1-213ENST00000540338 MCM9Q9NXL9 1143 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 ZNF804AQ7Z570 1209 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 TBC1D10CQ8IV04 446 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 SLF2Q8IX21 1173 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 LCORLQ8N3X6 602 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 CNBD1Q8NA66 436 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 JAG2Q9Y219 1238 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 MRVI1Q9Y6F6 885 aa12.41□□□□□ -0.42
CLIP1-213ENST00000540338 PHRF1Q9P1Y6 1649 aaKnown RBP12.4□□□□□ -0.42
CLIP1-213ENST00000540338 UBN2Q6ZU65 1347 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 A0A0G2JLW4 131 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 C6orf229H3BNL8 230 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 PRDM1O75626 825 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 LDHBP07195 334 aaKnown RBP12.4□□□□□ -0.42
CLIP1-213ENST00000540338 ALX1Q15699 326 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 SLC4A8Q2Y0W8 1093 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 DIS3L2Q8IYB7 885 aaKnown RBP12.4□□□□□ -0.42
CLIP1-213ENST00000540338 ZSWIM5Q9P217 1185 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 MRC1P22897 1456 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 ZNF500O60304 480 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-213ENST00000540338 RILPL1Q5EBL4 403 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 INTS5Q6P9B9 1019 aaKnown RBP12.4□□□□□ -0.42
CLIP1-213ENST00000540338 PGBD1Q96JS3 809 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 ARID3AQ99856 593 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 TRIM34Q9BYJ4 488 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 BSDC1Q9NW68 430 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-213ENST00000540338 TRPM3Q9HCF6 1732 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-213ENST00000540338 ZNF202O95125 648 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 ITPK1Q13572 414 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 CFAP100Q494V2 611 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 PDILTQ8N807 584 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 KRI1Q8N9T8 703 aaKnown RBP12.4□□□□□ -0.42
CLIP1-213ENST00000540338 SLC4A9Q96Q91 983 aa12.4□□□□□ -0.42
CLIP1-213ENST00000540338 RBM28Q9NW13 759 aaKnown RBP12.4□□□□□ -0.42
CLIP1-213ENST00000540338 RAD21O60216 631 aa12.4□□□□□ -0.43
CLIP1-213ENST00000540338 LIFRP42702 1097 aa12.4□□□□□ -0.43
CLIP1-213ENST00000540338 KANK3Q6NY19 840 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms