RNA–Protein interactions for RNA: ENST00000538838.5

TMEM260-202, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best) BASIC

Gene TMEM260, Length 1,638 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-202ENST00000538838 RIOK1Q9BRS2 568 aaKnown RBP28.27■■■□□ 2.12
TMEM260-202ENST00000538838 NOL10Q9BSC4 688 aaKnown RBP28.27■■■□□ 2.12
TMEM260-202ENST00000538838 ARMT1Q9H993 441 aa28.27■■■□□ 2.12
TMEM260-202ENST00000538838 RAD50Q92878 1312 aa28.27■■■□□ 2.12
TMEM260-202ENST00000538838 GPAA1O43292 621 aa28.26■■■□□ 2.11
TMEM260-202ENST00000538838 LMOD1P29536 600 aaPredicted RBP28.26■■■□□ 2.11
TMEM260-202ENST00000538838 DLGAP5Q15398 846 aa28.26■■■□□ 2.11
TMEM260-202ENST00000538838 APOBEC3HQ6NTF7 200 aaKnown RBP28.26■■■□□ 2.11
TMEM260-202ENST00000538838 SAMD7Q7Z3H4 446 aa28.26■■■□□ 2.11
TMEM260-202ENST00000538838 SGSM2O43147 1006 aa28.25■■■□□ 2.11
TMEM260-202ENST00000538838 MMP14P50281 582 aa28.25■■■□□ 2.11
TMEM260-202ENST00000538838 TBC1D10BQ4KMP7 808 aaPredicted RBP28.25■■■□□ 2.11
TMEM260-202ENST00000538838 SPDYE2BA6NHP3 402 aa28.25■■■□□ 2.11
TMEM260-202ENST00000538838 H7C1D1 291 aa28.25■■■□□ 2.11
TMEM260-202ENST00000538838 SPDYE6P0CI01 402 aa28.25■■■□□ 2.11
TMEM260-202ENST00000538838 RBM26Q5T8P6 1007 aaKnown RBP28.25■■■□□ 2.11
TMEM260-202ENST00000538838 CCDC171Q6TFL3 1326 aa28.24■■■□□ 2.11
TMEM260-202ENST00000538838 NAV1Q8NEY1 1877 aa28.24■■■□□ 2.11
TMEM260-202ENST00000538838 BAG3O95817 575 aa28.24■■■□□ 2.11
TMEM260-202ENST00000538838 KIF4BQ2VIQ3 1234 aa28.24■■■□□ 2.11
TMEM260-202ENST00000538838 MTMR14Q8NCE2 650 aa28.24■■■□□ 2.11
TMEM260-202ENST00000538838 PRMT6Q96LA8 375 aaPredicted RBP28.24■■■□□ 2.11
TMEM260-202ENST00000538838 PPP4CP60510 307 aa28.23■■■□□ 2.11
TMEM260-202ENST00000538838 TRPM4Q8TD43 1214 aa28.23■■■□□ 2.11
TMEM260-202ENST00000538838 SH3RF3Q8TEJ3 882 aaPredicted RBP28.23■■■□□ 2.11
TMEM260-202ENST00000538838 ZBED3Q96IU2 234 aaPredicted RBP28.23■■■□□ 2.11
TMEM260-202ENST00000538838 RHBDL3P58872 404 aa28.22■■■□□ 2.11
TMEM260-202ENST00000538838 STRBPQ96SI9 672 aaKnown RBP28.22■■■□□ 2.11
TMEM260-202ENST00000538838 CDC42EP5Q6NZY7 148 aa28.21■■■□□ 2.11
TMEM260-202ENST00000538838 TDRD3Q9H7E2 651 aaKnown RBP28.21■■■□□ 2.11
TMEM260-202ENST00000538838 HACL1Q9UJ83 578 aa28.21■■■□□ 2.11
TMEM260-202ENST00000538838 BAZ2AQ9UIF9 1905 aaKnown RBP28.21■■■□□ 2.11
TMEM260-202ENST00000538838 WNT10BO00744 389 aa28.21■■■□□ 2.11
TMEM260-202ENST00000538838 NBPF9Q3BBW0 867 aa28.21■■■□□ 2.11
TMEM260-202ENST00000538838 ADARB2Q9NS39 739 aaKnown RBP28.21■■■□□ 2.11
TMEM260-202ENST00000538838 USP40Q9NVE5 1235 aa28.21■■■□□ 2.11
TMEM260-202ENST00000538838 DDX60LQ5H9U9 1706 aaKnown RBP28.2■■■□□ 2.11
TMEM260-202ENST00000538838 VPS53Q5VIR6 699 aa28.2■■■□□ 2.1
TMEM260-202ENST00000538838 POTECB2RU33 542 aa28.19■■■□□ 2.1
TMEM260-202ENST00000538838 PRKAB2O43741 272 aa28.19■■■□□ 2.1
TMEM260-202ENST00000538838 PLCG2P16885 1265 aa28.19■■■□□ 2.1
TMEM260-202ENST00000538838 CERS3Q8IU89 383 aa28.19■■■□□ 2.1
TMEM260-202ENST00000538838 TEX11Q8IYF3 940 aa28.19■■■□□ 2.1
TMEM260-202ENST00000538838 MFAP1P55081 439 aaKnown RBP28.18■■■□□ 2.1
TMEM260-202ENST00000538838 ZNF526Q8TF50 670 aaPredicted RBP28.18■■■□□ 2.1
TMEM260-202ENST00000538838 CRNKL1Q9BZJ0 848 aaKnown RBP28.18■■■□□ 2.1
TMEM260-202ENST00000538838 SLC4A4Q9Y6R1 1079 aa28.18■■■□□ 2.1
TMEM260-202ENST00000538838 CLRN2A0PK11 232 aa28.18■■■□□ 2.1
TMEM260-202ENST00000538838 IQCA1LA6NCM1 817 aa28.18■■■□□ 2.1
TMEM260-202ENST00000538838 EPHX2P34913 555 aa28.18■■■□□ 2.1
TMEM260-202ENST00000538838 CACNB3P54284 484 aa28.18■■■□□ 2.1
TMEM260-202ENST00000538838 SDR42E1Q8WUS8 393 aa28.18■■■□□ 2.1
TMEM260-202ENST00000538838 MYH1P12882 1939 aa28.17■■■□□ 2.1
TMEM260-202ENST00000538838 ASTN2O75129 1339 aaPredicted RBP28.17■■■□□ 2.1
TMEM260-202ENST00000538838 FOXP2O15409 715 aa28.17■■■□□ 2.1
TMEM260-202ENST00000538838 HIRAP54198 1017 aaPredicted RBP28.17■■■□□ 2.1
TMEM260-202ENST00000538838 ANO2Q9NQ90 1003 aa28.17■■■□□ 2.1
TMEM260-202ENST00000538838 LAMB1P07942 1786 aa28.16■■■□□ 2.1
TMEM260-202ENST00000538838 SPDYE2Q495Y8 402 aa28.16■■■□□ 2.1
TMEM260-202ENST00000538838 ZNF70Q9UC06 446 aaPredicted RBP28.16■■■□□ 2.1
TMEM260-202ENST00000538838 MYO1BO43795 1136 aa28.15■■■□□ 2.1
TMEM260-202ENST00000538838 WDHD1O75717 1129 aaPredicted RBP28.15■■■□□ 2.1
TMEM260-202ENST00000538838 SEC24BO95487 1268 aa28.15■■■□□ 2.1
TMEM260-202ENST00000538838 HSPD1P10809 573 aaKnown RBP28.15■■■□□ 2.1
TMEM260-202ENST00000538838 GNAT2P19087 354 aa28.15■■■□□ 2.1
TMEM260-202ENST00000538838 PTH1RQ03431 593 aa28.15■■■□□ 2.1
TMEM260-202ENST00000538838 TGFBRAP1Q8WUH2 860 aa28.15■■■□□ 2.1
TMEM260-202ENST00000538838 TAF1DQ9H5J8 278 aaPredicted RBP28.15■■■□□ 2.1
TMEM260-202ENST00000538838 LSG1Q9H089 658 aaKnown RBP28.14■■■□□ 2.1
TMEM260-202ENST00000538838 EPB41L4AQ9HCS5 686 aaPredicted RBP28.14■■■□□ 2.1
TMEM260-202ENST00000538838 LAMA4Q16363 1823 aa28.14■■■□□ 2.1
TMEM260-202ENST00000538838 GSG1L2A8MUP6 293 aa28.14■■■□□ 2.09
TMEM260-202ENST00000538838 USP5P45974 858 aa28.14■■■□□ 2.09
TMEM260-202ENST00000538838 NFIAQ12857 509 aa28.14■■■□□ 2.09
TMEM260-202ENST00000538838 PICALMQ13492 652 aa28.14■■■□□ 2.09
TMEM260-202ENST00000538838 KIAA1211Q6ZU35 1233 aa28.14■■■□□ 2.09
TMEM260-202ENST00000538838 RRAGCQ9HB90 399 aa28.14■■■□□ 2.09
TMEM260-202ENST00000538838 VEZTQ9HBM0 779 aa28.14■■■□□ 2.09
TMEM260-202ENST00000538838 DDX4Q9NQI0 724 aaKnown RBP28.14■■■□□ 2.09
TMEM260-202ENST00000538838 APPP05067 770 aa28.13■■■□□ 2.09
TMEM260-202ENST00000538838 MAPKAPK5Q8IW41 473 aa28.13■■■□□ 2.09
TMEM260-202ENST00000538838 NMRK2Q9NPI5 230 aa28.13■■■□□ 2.09
TMEM260-202ENST00000538838 TMOD2Q9NZR1 351 aa28.13■■■□□ 2.09
TMEM260-202ENST00000538838 POLR2AP24928 1970 aaKnown RBP28.13■■■□□ 2.09
TMEM260-202ENST00000538838 FLT1P17948 1338 aa28.12■■■□□ 2.09
TMEM260-202ENST00000538838 PATL2C9JE40 543 aaKnown RBP28.12■■■□□ 2.09
TMEM260-202ENST00000538838 REC8O95072 547 aa28.12■■■□□ 2.09
TMEM260-202ENST00000538838 USP50Q70EL3 339 aaPredicted RBP28.11■■■□□ 2.09
TMEM260-202ENST00000538838 DSCC1Q9BVC3 393 aa28.11■■■□□ 2.09
TMEM260-202ENST00000538838 BACH2Q9BYV9 841 aa28.11■■■□□ 2.09
TMEM260-202ENST00000538838 DCP1AQ9NPI6 582 aaPredicted RBP28.11■■■□□ 2.09
TMEM260-202ENST00000538838 GGA3Q9NZ52 723 aa28.11■■■□□ 2.09
TMEM260-202ENST00000538838 TCP10L2B9ZVM9 353 aa28.1■■■□□ 2.09
TMEM260-202ENST00000538838 ANGEL2Q5VTE6 544 aaKnown RBP28.1■■■□□ 2.09
TMEM260-202ENST00000538838 IDI2Q9BXS1 227 aa28.1■■■□□ 2.09
TMEM260-202ENST00000538838 ATP8A2Q9NTI2 1148 aa28.1■■■□□ 2.09
TMEM260-202ENST00000538838 FAM198AQ9UFP1 575 aa28.1■■■□□ 2.09
TMEM260-202ENST00000538838 RPAP1Q9BWH6 1393 aaPredicted RBP28.1■■■□□ 2.09
TMEM260-202ENST00000538838 VEGFAP15692 232 aaPredicted RBP28.1■■■□□ 2.09
TMEM260-202ENST00000538838 EAPPQ56P03 285 aaPredicted RBP28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms