RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 BIRC2Q13490 618 aa11.15□□□□□ -0.63
COL4A6-208ENST00000538570 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.15□□□□□ -0.63
COL4A6-208ENST00000538570 SH3BP5O60239 455 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 CREB3L3Q68CJ9 461 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 IQSEC3Q9UPP2 1182 aaPredicted RBP11.14□□□□□ -0.63
COL4A6-208ENST00000538570 RPRD2Q5VT52 1461 aaKnown RBP11.14□□□□□ -0.63
COL4A6-208ENST00000538570 ELP1O95163 1332 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 F8W031 263 aaPredicted RBP11.14□□□□□ -0.63
COL4A6-208ENST00000538570 PPP1R2P41236 205 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 MYL5Q02045 173 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 DCAF17Q5H9S7 520 aaPredicted RBP11.14□□□□□ -0.63
COL4A6-208ENST00000538570 FYB2Q5VWT5 728 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 ATL3Q6DD88 541 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 ZNF365Q70YC5 407 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 RUFY3Q7L099 469 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 GBP7Q8N8V2 638 aaPredicted RBP11.14□□□□□ -0.63
COL4A6-208ENST00000538570 MRPL50Q8N5N7 158 aaKnown RBP11.14□□□□□ -0.63
COL4A6-208ENST00000538570 PCDHB15Q9Y5E8 787 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 NDUFAB1O14561 156 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 LMBR1LQ6UX01 489 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 CACNA2D3Q8IZS8 1091 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 NAP1L4Q99733 375 aaKnown RBP11.14□□□□□ -0.63
COL4A6-208ENST00000538570 TUBB2AQ13885 445 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 TRIM14Q14142 442 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 CLUL1Q15846 466 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 CEP85LQ5SZL2 805 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 CCDC65Q8IXS2 484 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 SMC5Q8IY18 1101 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 CCT6BQ92526 530 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 TUBB2BQ9BVA1 445 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 FRMD4BQ9Y2L6 1034 aa11.14□□□□□ -0.63
COL4A6-208ENST00000538570 UAP1Q16222 522 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 VWA3BQ502W6 1294 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 AKNAD1Q5T1N1 836 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 KSR2Q6VAB6 950 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 COPS6Q7L5N1 327 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 INTS4Q96HW7 963 aaKnown RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 NGLY1Q96IV0 654 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 SETDB2Q96T68 719 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 GBP1P32455 592 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 ERCC6LQ2NKX8 1250 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 KIFAP3Q92845 792 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 C14orf93Q9H972 538 aaKnown RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 BIVM-ERCC5R4GMW8 1640 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 EPB41P11171 864 aaKnown RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 RLBP1P12271 317 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 ERCC5P28715 1186 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 PLS1Q14651 629 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 VPS52Q8N1B4 723 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 LEO1Q8WVC0 666 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 NAPGQ99747 312 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 CTNND2Q9UQB3 1225 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 NEDD9Q14511 834 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 DHX32Q7L7V1 743 aaKnown RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 CHST3Q7LGC8 479 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 VTI1AQ96AJ9 217 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 TSPYL2Q9H2G4 693 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 AGTPBP1Q9UPW5 1226 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 CRCPO75575 148 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 SV2BQ7L1I2 683 aa11.13□□□□□ -0.63
COL4A6-208ENST00000538570 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-208ENST00000538570 GIGYF1O75420 1035 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 PLCG2P16885 1265 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 C16orf71Q8IYS4 520 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 NOC4LQ9BVI4 516 aaKnown RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 TRIM4Q9C037 500 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 TPX2Q9ULW0 747 aaKnown RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 KRT5P13647 590 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 HPDP32754 393 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 SECISBP2LQ93073 1101 aaKnown RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 NLRP3Q96P20 1036 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 PLIN2Q99541 437 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 ELF2Q15723 593 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 OGFOD1Q8N543 542 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 FRMD3A2A2Y4 597 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 CCT6AP40227 531 aaKnown RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 ARHGAP25P42331 645 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 ZSCAN26Q16670 478 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 LRRC23Q53EV4 343 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 MAGEB6Q8N7X4 407 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 UTP11Q9Y3A2 253 aaKnown RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 ACTN4O43707 911 aaKnown RBP11.12□□□□□ -0.63
COL4A6-208ENST00000538570 VCXQ9H320 206 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 VCX3BQ9H321 246 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 ZBTB21Q9ULJ3 1066 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 NOS1P29475 1434 aa11.12□□□□□ -0.63
COL4A6-208ENST00000538570 SPOPO43791 374 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 WDR44Q5JSH3 913 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 C8orf74Q6P047 294 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 CYP26C1Q6V0L0 522 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 FAM204AQ9H8W3 233 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 MCM9Q9NXL9 1143 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 DISP3Q9P2K9 1392 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 GPATCH8Q9UKJ3 1502 aaKnown RBP11.11□□□□□ -0.63
COL4A6-208ENST00000538570 E7EVH7 732 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 OAS2P29728 719 aaKnown RBP11.11□□□□□ -0.63
COL4A6-208ENST00000538570 TTF2Q9UNY4 1162 aaKnown RBP11.11□□□□□ -0.63
COL4A6-208ENST00000538570 RAD50Q92878 1312 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 ACEP12821 1306 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 TNFAIP3P21580 790 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms