RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CCDC25Q86WR0 208 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 CNGA4Q8IV77 575 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 IFT81Q8WYA0 676 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 STMN2Q93045 179 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 PPP1R9BQ96SB3 815 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 VPS18Q9P253 973 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 ALDH1L1O75891 902 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 GNA11P29992 359 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 ATP5DP30049 168 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 NUCB1Q02818 461 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 TTC31Q49AM3 519 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-209ENST00000537178 ZNF569Q5MCW4 686 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 Q6ZUG5 572 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 INTS8Q75QN2 995 aaKnown RBP11.97□□□□□ -0.49
CLIP1-209ENST00000537178 IFT74Q96LB3 600 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 CD109Q6YHK3 1445 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 RTL9Q8NET4 1388 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 SMIM23A6NLE4 172 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 SH3BP5O60239 455 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 CLUL1Q15846 466 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 GPR161Q8N6U8 529 aaKnown RBP11.97□□□□□ -0.49
CLIP1-209ENST00000537178 IQUBQ8NA54 791 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 CAPZA3Q96KX2 299 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 TCEANC2Q96MN5 208 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 SEC62Q99442 399 aaKnown RBP11.97□□□□□ -0.49
CLIP1-209ENST00000537178 TNNQ9UQP3 1299 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 PPP1R2P41236 205 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 CCDC117Q8IWD4 279 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-209ENST00000537178 MBIPQ9NS73 344 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 GNAT2P19087 354 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 CCDC26Q8TAB7 109 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 NOS1P29475 1434 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 CIB2O75838 187 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 GAS8O95995 478 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 DNM1Q05193 864 aaKnown RBP11.96□□□□□ -0.49
CLIP1-209ENST00000537178 SLC9C2Q5TAH2 1124 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 BRAPQ7Z569 592 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 WDR66Q8TBY9 1149 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 RRP36Q96EU6 259 aaKnown RBP11.96□□□□□ -0.49
CLIP1-209ENST00000537178 PLCG2P16885 1265 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 SEL1L2Q5TEA6 688 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 VTI1AQ96AJ9 217 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 TSGA10Q9BZW7 698 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 LZTFL1Q9NQ48 299 aa11.96□□□□□ -0.49
CLIP1-209ENST00000537178 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.96□□□□□ -0.49
CLIP1-209ENST00000537178 FAM184BQ9ULE4 1060 aa11.96□□□□□ -0.5
CLIP1-209ENST00000537178 GIGYF1O75420 1035 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-209ENST00000537178 TNNI2P48788 182 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 ERCC6LQ2NKX8 1250 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 HDXQ7Z353 690 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 NLRP3Q96P20 1036 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 KARSQ15046 597 aaKnown RBP11.95□□□□□ -0.5
CLIP1-209ENST00000537178 DPH6Q7L8W6 267 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 DTHD1Q6ZMT9 781 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 SNX21Q969T3 373 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 MED14O60244 1454 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 RHOXF2BP0C7M4 288 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 KRT2P35908 639 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 TAF12Q16514 161 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 DNAJC21Q5F1R6 531 aaKnown RBP11.95□□□□□ -0.5
CLIP1-209ENST00000537178 GBP6Q6ZN66 633 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 PLCD3Q8N3E9 789 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 LEO1Q8WVC0 666 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-209ENST00000537178 CCT6BQ92526 530 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 NAP1L4Q99733 375 aaKnown RBP11.95□□□□□ -0.5
CLIP1-209ENST00000537178 RHOXF2Q9BQY4 288 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 CFAP74Q9C0B2 1584 aa11.95□□□□□ -0.5
CLIP1-209ENST00000537178 A0A1B0GUA9 196 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 STX17P56962 302 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 ANKRD44Q8N8A2 993 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 AMOTL2Q9Y2J4 779 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 A6NNZ2 444 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 KIF3CO14782 793 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 ERCC5P28715 1186 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-209ENST00000537178 TUBB8Q3ZCM7 444 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 CACNA2D3Q8IZS8 1091 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 FAM212AQ96EL1 285 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 CD163L1Q9NR16 1453 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 NEDD9Q14511 834 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 VWA3BQ502W6 1294 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 ATL3Q6DD88 541 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 B4GALNT4Q76KP1 1039 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 MAK16Q9BXY0 300 aaKnown RBP11.94□□□□□ -0.5
CLIP1-209ENST00000537178 VCX3BQ9H321 246 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 IFNKQ9P0W0 207 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 CCDC122Q5T0U0 273 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 GABPB2Q8TAK5 448 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-209ENST00000537178 CAMSAP1Q5T5Y3 1602 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 GRM8O00222 908 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 ACTN4O43707 911 aaKnown RBP11.94□□□□□ -0.5
CLIP1-209ENST00000537178 LMBR1LQ6UX01 489 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 SYT10Q6XYQ8 523 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 MIPOL1Q8TD10 442 aa11.94□□□□□ -0.5
CLIP1-209ENST00000537178 GLI2P10070 1586 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 VPS52Q8N1B4 723 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 FAM204AQ9H8W3 233 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 STX10O60499 249 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 ATP8B2P98198 1209 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 ZNF804AQ7Z570 1209 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 CROCCP2Q86T23 111 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms