RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 DDX60LQ5H9U9 1706 aaKnown RBP13.71□□□□□ -0.21
CSDE1-215ENST00000533818 IGHMBP2P38935 993 aaKnown RBP13.71□□□□□ -0.21
CSDE1-215ENST00000533818 TRIM32Q13049 653 aa13.71□□□□□ -0.21
CSDE1-215ENST00000533818 GRIN2CQ14957 1233 aa13.71□□□□□ -0.21
CSDE1-215ENST00000533818 C9orf50Q5SZB4 431 aa13.71□□□□□ -0.21
CSDE1-215ENST00000533818 TTLL11Q8NHH1 800 aa13.71□□□□□ -0.21
CSDE1-215ENST00000533818 MYD88Q99836 296 aa13.71□□□□□ -0.21
CSDE1-215ENST00000533818 BABAM1Q9NWV8 329 aa13.71□□□□□ -0.21
CSDE1-215ENST00000533818 HYPKQ9NX55 129 aa13.71□□□□□ -0.21
CSDE1-215ENST00000533818 DBF4Q9UBU7 674 aaPredicted RBP13.71□□□□□ -0.21
CSDE1-215ENST00000533818 CDH23Q9H251 3354 aa13.71□□□□□ -0.21
CSDE1-215ENST00000533818 IL1R1P14778 569 aa13.7□□□□□ -0.22
CSDE1-215ENST00000533818 INPP5BP32019 993 aa13.7□□□□□ -0.22
CSDE1-215ENST00000533818 KRT24Q2M2I5 525 aa13.7□□□□□ -0.22
CSDE1-215ENST00000533818 HDGFL1Q5TGJ6 251 aa13.7□□□□□ -0.22
CSDE1-215ENST00000533818 DCAF15Q66K64 600 aa13.7□□□□□ -0.22
CSDE1-215ENST00000533818 CWC25Q9NXE8 425 aaPredicted RBP13.7□□□□□ -0.22
CSDE1-215ENST00000533818 PRKAG2Q9UGJ0 569 aa13.7□□□□□ -0.22
CSDE1-215ENST00000533818 TTF2Q9UNY4 1162 aaKnown RBP13.7□□□□□ -0.22
CSDE1-215ENST00000533818 ZNF804AQ7Z570 1209 aa13.69□□□□□ -0.22
CSDE1-215ENST00000533818 MGAMO43451 1857 aa13.69□□□□□ -0.22
CSDE1-215ENST00000533818 SNAP23O00161 211 aa13.68□□□□□ -0.22
CSDE1-215ENST00000533818 CXCL11O14625 94 aa13.68□□□□□ -0.22
CSDE1-215ENST00000533818 CACNB3P54284 484 aa13.68□□□□□ -0.22
CSDE1-215ENST00000533818 GOLGA2Q08379 1002 aa13.68□□□□□ -0.22
CSDE1-215ENST00000533818 MIGA2Q7L4E1 593 aa13.68□□□□□ -0.22
CSDE1-215ENST00000533818 SMCR8Q8TEV9 937 aaPredicted RBP13.68□□□□□ -0.22
CSDE1-215ENST00000533818 NECAB3Q96P71 396 aaPredicted RBP13.68□□□□□ -0.22
CSDE1-215ENST00000533818 MPHOSPH8Q99549 860 aa13.68□□□□□ -0.22
CSDE1-215ENST00000533818 P2RX7Q99572 595 aaKnown RBP13.68□□□□□ -0.22
CSDE1-215ENST00000533818 ZNF341Q9BYN7 854 aa13.68□□□□□ -0.22
CSDE1-215ENST00000533818 TIMELESSQ9UNS1 1208 aa13.68□□□□□ -0.22
CSDE1-215ENST00000533818 DNAH12Q6ZR08 3092 aa13.67□□□□□ -0.22
CSDE1-215ENST00000533818 MUC6Q6W4X9 2439 aa13.67□□□□□ -0.22
CSDE1-215ENST00000533818 CRKP46108 304 aa13.67□□□□□ -0.22
CSDE1-215ENST00000533818 PDE3AQ14432 1141 aa13.67□□□□□ -0.22
CSDE1-215ENST00000533818 TMEM31Q5JXX7 168 aa13.67□□□□□ -0.22
CSDE1-215ENST00000533818 C15orf52Q6ZUT6 534 aaKnown RBP13.67□□□□□ -0.22
CSDE1-215ENST00000533818 FASTKD5Q7L8L6 764 aaKnown RBP13.67□□□□□ -0.22
CSDE1-215ENST00000533818 PLEKHF1Q96S99 279 aa13.67□□□□□ -0.22
CSDE1-215ENST00000533818 MRE11P49959 708 aa13.66□□□□□ -0.22
CSDE1-215ENST00000533818 CHRNDQ07001 517 aa13.66□□□□□ -0.22
CSDE1-215ENST00000533818 MFSD14BQ5SR56 506 aa13.66□□□□□ -0.22
CSDE1-215ENST00000533818 ANKRD13CQ8N6S4 541 aa13.66□□□□□ -0.22
CSDE1-215ENST00000533818 SENP6Q9GZR1 1112 aaPredicted RBP13.66□□□□□ -0.22
CSDE1-215ENST00000533818 EPHX3Q9H6B9 360 aa13.66□□□□□ -0.22
CSDE1-215ENST00000533818 PRKAR2AP13861 404 aaKnown RBP13.65□□□□□ -0.22
CSDE1-215ENST00000533818 GADL1Q6ZQY3 521 aa13.65□□□□□ -0.22
CSDE1-215ENST00000533818 FAM83AQ86UY5 434 aa13.65□□□□□ -0.22
CSDE1-215ENST00000533818 GJD2Q9UKL4 321 aa13.65□□□□□ -0.22
CSDE1-215ENST00000533818 DLG5Q8TDM6 1919 aa13.64□□□□□ -0.23
CSDE1-215ENST00000533818 TAF5LO75529 589 aa13.64□□□□□ -0.23
CSDE1-215ENST00000533818 MAP3K21Q5TCX8 1036 aa13.64□□□□□ -0.23
CSDE1-215ENST00000533818 POTEEQ6S8J3 1075 aa13.64□□□□□ -0.23
CSDE1-215ENST00000533818 TMOD2Q9NZR1 351 aa13.64□□□□□ -0.23
CSDE1-215ENST00000533818 ZNF112Q9UJU3 913 aa13.64□□□□□ -0.23
CSDE1-215ENST00000533818 SLC45A1Q9Y2W3 748 aa13.64□□□□□ -0.23
CSDE1-215ENST00000533818 ARAP2Q8WZ64 1704 aa13.64□□□□□ -0.23
CSDE1-215ENST00000533818 A0A0G2JLL6 359 aaPredicted RBP13.63□□□□□ -0.23
CSDE1-215ENST00000533818 PPP2R1AP30153 589 aa13.63□□□□□ -0.23
CSDE1-215ENST00000533818 ATN1P54259 1190 aaPredicted RBP13.63□□□□□ -0.23
CSDE1-215ENST00000533818 AKNAD1Q5T1N1 836 aa13.63□□□□□ -0.23
CSDE1-215ENST00000533818 PRRT2Q7Z6L0 340 aaPredicted RBP13.63□□□□□ -0.23
CSDE1-215ENST00000533818 TRIB2Q92519 343 aa13.63□□□□□ -0.23
CSDE1-215ENST00000533818 BADQ92934 168 aa13.63□□□□□ -0.23
CSDE1-215ENST00000533818 GAS2L1Q99501 681 aaPredicted RBP13.63□□□□□ -0.23
CSDE1-215ENST00000533818 ZNF576Q9H609 170 aa13.63□□□□□ -0.23
CSDE1-215ENST00000533818 MAPK8IP3Q9UPT6 1336 aa13.63□□□□□ -0.23
CSDE1-215ENST00000533818 ITGA6P23229 1130 aa13.62□□□□□ -0.23
CSDE1-215ENST00000533818 CCDC85BQ15834 202 aaPredicted RBP13.62□□□□□ -0.23
CSDE1-215ENST00000533818 NOL9Q5SY16 702 aaKnown RBP13.62□□□□□ -0.23
CSDE1-215ENST00000533818 LHX8Q68G74 356 aa13.62□□□□□ -0.23
CSDE1-215ENST00000533818 ZHX2Q9Y6X8 837 aa13.62□□□□□ -0.23
CSDE1-215ENST00000533818 HOXB7P09629 217 aa13.61□□□□□ -0.23
CSDE1-215ENST00000533818 BMP1P13497 986 aa13.61□□□□□ -0.23
CSDE1-215ENST00000533818 DNAJB2P25686 324 aa13.61□□□□□ -0.23
CSDE1-215ENST00000533818 RIPK4P57078 832 aa13.61□□□□□ -0.23
CSDE1-215ENST00000533818 FAM110CQ1W6H9 321 aa13.61□□□□□ -0.23
CSDE1-215ENST00000533818 FKBP1CQ5VVH2 108 aa13.61□□□□□ -0.23
CSDE1-215ENST00000533818 RNPC3Q96LT9 517 aaKnown RBP13.61□□□□□ -0.23
CSDE1-215ENST00000533818 METTL22Q9BUU2 404 aaPredicted RBP13.61□□□□□ -0.23
CSDE1-215ENST00000533818 PHAXQ9H814 394 aaKnown RBP13.61□□□□□ -0.23
CSDE1-215ENST00000533818 SPEF2Q9C093 1822 aa13.6□□□□□ -0.23
CSDE1-215ENST00000533818 CHL1O00533 1208 aa13.6□□□□□ -0.23
CSDE1-215ENST00000533818 CYP2B6P20813 491 aa13.6□□□□□ -0.23
CSDE1-215ENST00000533818 RTP1P59025 263 aa13.6□□□□□ -0.23
CSDE1-215ENST00000533818 CACNB2Q08289 660 aaPredicted RBP13.6□□□□□ -0.23
CSDE1-215ENST00000533818 PNNQ9H307 717 aaKnown RBP13.6□□□□□ -0.23
CSDE1-215ENST00000533818 PRDM5Q9NQX1 630 aaPredicted RBP13.6□□□□□ -0.23
CSDE1-215ENST00000533818 ATP11BQ9Y2G3 1177 aa13.6□□□□□ -0.23
CSDE1-215ENST00000533818 DOCK3Q8IZD9 2030 aa13.59□□□□□ -0.23
CSDE1-215ENST00000533818 GPR37L1O60883 481 aa13.59□□□□□ -0.23
CSDE1-215ENST00000533818 CCND3P30281 292 aaPredicted RBP13.59□□□□□ -0.23
CSDE1-215ENST00000533818 HDLBPQ00341 1268 aaKnown RBP13.59□□□□□ -0.23
CSDE1-215ENST00000533818 POTEDQ86YR6 584 aa13.59□□□□□ -0.23
CSDE1-215ENST00000533818 TEKT1Q969V4 418 aa13.59□□□□□ -0.23
CSDE1-215ENST00000533818 LAS1LQ9Y4W2 734 aaKnown RBP13.59□□□□□ -0.23
CSDE1-215ENST00000533818 GRIK5Q16478 980 aa13.58□□□□□ -0.24
CSDE1-215ENST00000533818 TDRD7Q8NHU6 1098 aaKnown RBP13.58□□□□□ -0.24
CSDE1-215ENST00000533818 TIFAQ96CG3 184 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms