RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ARL4DP49703 201 aa5.03□□□□□ -1.6
CD44-229ENST00000528672 NAALADL2Q58DX5 795 aa5.03□□□□□ -1.6
CD44-229ENST00000528672 RPS26P11Q5JNZ5 115 aaPredicted RBP5.03□□□□□ -1.6
CD44-229ENST00000528672 SHISA2Q6UWI4 295 aa5.03□□□□□ -1.6
CD44-229ENST00000528672 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.03□□□□□ -1.6
CD44-229ENST00000528672 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.03□□□□□ -1.6
CD44-229ENST00000528672 DZIP1LQ8IYY4 767 aaKnown RBP5.03□□□□□ -1.6
CD44-229ENST00000528672 FBXO27Q8NI29 283 aa5.03□□□□□ -1.6
CD44-229ENST00000528672 CRELD1Q96HD1 420 aa5.03□□□□□ -1.6
CD44-229ENST00000528672 SRCIN1Q9C0H9 1055 aa5.03□□□□□ -1.6
CD44-229ENST00000528672 AKTIPQ9H8T0 292 aa5.03□□□□□ -1.6
CD44-229ENST00000528672 GPN3Q9UHW5 284 aaPredicted RBP5.03□□□□□ -1.6
CD44-229ENST00000528672 KRTAP4-8A0A0G2JLE6 195 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 F8W735 103 aaPredicted RBP5.02□□□□□ -1.61
CD44-229ENST00000528672 TFE3P19532 575 aaPredicted RBP5.02□□□□□ -1.61
CD44-229ENST00000528672 BMP6P22004 513 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 NLRP12P59046 1061 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 C19orf57Q0VDD7 668 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 SEPT6Q14141 434 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 IKBKEQ14164 716 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 TAF1CQ15572 869 aaPredicted RBP5.02□□□□□ -1.61
CD44-229ENST00000528672 CCDC85BQ15834 202 aaPredicted RBP5.02□□□□□ -1.61
CD44-229ENST00000528672 HP1BP3Q5SSJ5 553 aaPredicted RBP5.02□□□□□ -1.61
CD44-229ENST00000528672 SLC51AQ86UW1 340 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 UBASH3BQ8TF42 649 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 NECAB3Q96P71 396 aaPredicted RBP5.02□□□□□ -1.61
CD44-229ENST00000528672 CEP41Q9BYV8 373 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 CLEC4MQ9H2X3 399 aaPredicted RBP5.02□□□□□ -1.61
CD44-229ENST00000528672 GOLGA2P5Q9HBQ8 144 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 PPP1R1BQ9UD71 204 aaPredicted RBP5.02□□□□□ -1.61
CD44-229ENST00000528672 ADAMTS1Q9UHI8 967 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 GGT7Q9UJ14 662 aa5.02□□□□□ -1.61
CD44-229ENST00000528672 MEGF11A6BM72 1044 aa5.01□□□□□ -1.61
CD44-229ENST00000528672 GIPC1O14908 333 aa5.01□□□□□ -1.61
CD44-229ENST00000528672 GSTT1P30711 240 aa5.01□□□□□ -1.61
CD44-229ENST00000528672 ZNF76P36508 570 aa5.01□□□□□ -1.61
CD44-229ENST00000528672 GSTM4Q03013 218 aa5.01□□□□□ -1.61
CD44-229ENST00000528672 LRP8Q14114 963 aa5.01□□□□□ -1.61
CD44-229ENST00000528672 SF3A1Q15459 793 aaKnown RBP5.01□□□□□ -1.61
CD44-229ENST00000528672 BNC2Q6ZN30 1099 aaPredicted RBP5.01□□□□□ -1.61
CD44-229ENST00000528672 DDX54Q8TDD1 881 aaKnown RBP5.01□□□□□ -1.61
CD44-229ENST00000528672 ANKRD24Q8TF21 1146 aa5.01□□□□□ -1.61
CD44-229ENST00000528672 WFDC12Q8WWY7 111 aa5.01□□□□□ -1.61
CD44-229ENST00000528672 TLR3O15455 904 aaKnown RBP5□□□□□ -1.61
CD44-229ENST00000528672 HYAL3O43820 417 aaPredicted RBP5□□□□□ -1.61
CD44-229ENST00000528672 ALX3O95076 343 aa5□□□□□ -1.61
CD44-229ENST00000528672 B3GALT4O96024 378 aa5□□□□□ -1.61
CD44-229ENST00000528672 GARTP22102 1010 aa5□□□□□ -1.61
CD44-229ENST00000528672 NOS3P29474 1203 aa5□□□□□ -1.61
CD44-229ENST00000528672 CRKP46108 304 aa5□□□□□ -1.61
CD44-229ENST00000528672 ANKRD34AQ69YU3 496 aa5□□□□□ -1.61
CD44-229ENST00000528672 ERMP1Q7Z2K6 904 aa5□□□□□ -1.61
CD44-229ENST00000528672 AGGF1Q8N302 714 aaeCLIP5□□□□□ -1.61
CD44-229ENST00000528672 UBXN4Q92575 508 aa5□□□□□ -1.61
CD44-229ENST00000528672 FRMD6Q96NE9 622 aa5□□□□□ -1.61
CD44-229ENST00000528672 NRSN2Q9GZP1 204 aa5□□□□□ -1.61
CD44-229ENST00000528672 RNF208Q9H0X6 261 aa5□□□□□ -1.61
CD44-229ENST00000528672 PPP4R2Q9NY27 417 aa5□□□□□ -1.61
CD44-229ENST00000528672 DDX41Q9UJV9 622 aaKnown RBP5□□□□□ -1.61
CD44-229ENST00000528672 SYNGAP1Q96PV0 1343 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 PF4P02776 101 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 HSP90B1P14625 803 aaKnown RBP4.99□□□□□ -1.61
CD44-229ENST00000528672 LIG1P18858 919 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 HNRNPUQ00839 825 aaKnown RBP eCLIP4.99□□□□□ -1.61
CD44-229ENST00000528672 DUOXA2Q1HG44 320 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 PCNX4Q63HM2 1172 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 FBXL19Q6PCT2 694 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 PDZD3Q86UT5 571 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 USP48Q86UV5 1035 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 JARID2Q92833 1246 aaPredicted RBP4.99□□□□□ -1.61
CD44-229ENST00000528672 RNF34Q969K3 372 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 PUS7Q96PZ0 661 aaKnown RBP4.99□□□□□ -1.61
CD44-229ENST00000528672 SUGCTQ9HAC7 445 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 PPM1HQ9ULR3 514 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 CSADQ9Y600 493 aa4.99□□□□□ -1.61
CD44-229ENST00000528672 ZNF862O60290 1169 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 CYP11A1P05108 521 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 GBP2P32456 591 aaPredicted RBP4.98□□□□□ -1.61
CD44-229ENST00000528672 IREB2P48200 963 aaKnown RBP4.98□□□□□ -1.61
CD44-229ENST00000528672 LIG3P49916 1009 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 AP3B2Q13367 1082 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 TTBK2Q6IQ55 1244 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 KIAA1211Q6ZU35 1233 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 FAM177A1Q8N128 213 aaPredicted RBP4.98□□□□□ -1.61
CD44-229ENST00000528672 PHC3Q8NDX5 983 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 EAF1Q96JC9 268 aaPredicted RBP4.98□□□□□ -1.61
CD44-229ENST00000528672 CCDC86Q9H6F5 360 aaKnown RBP4.98□□□□□ -1.61
CD44-229ENST00000528672 CBX8Q9HC52 389 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 UBP1Q9NZI7 540 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 HIF3AQ9Y2N7 669 aa4.98□□□□□ -1.61
CD44-229ENST00000528672 F13A1P00488 732 aa4.97□□□□□ -1.61
CD44-229ENST00000528672 MAOBP27338 520 aa4.97□□□□□ -1.61
CD44-229ENST00000528672 MAP1SQ66K74 1059 aaPredicted RBP4.97□□□□□ -1.61
CD44-229ENST00000528672 ACAD11Q709F0 780 aa4.97□□□□□ -1.61
CD44-229ENST00000528672 UBE3DQ7Z6J8 389 aa4.97□□□□□ -1.61
CD44-229ENST00000528672 SULF2Q8IWU5 870 aa4.97□□□□□ -1.61
CD44-229ENST00000528672 GAL3ST3Q96A11 431 aa4.97□□□□□ -1.61
CD44-229ENST00000528672 FAM46AQ96IP4 442 aaKnown RBP4.97□□□□□ -1.61
CD44-229ENST00000528672 RHOVQ96L33 236 aa4.97□□□□□ -1.61
CD44-229ENST00000528672 USP26Q9BXU7 913 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms