RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 BRWD3Q6RI45 1802 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 GOLGA8BA8MQT2 603 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 BBOX1O75936 387 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 CRY2Q49AN0 593 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 SYNE3Q6ZMZ3 975 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 AMIGO3Q86WK7 504 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 IGDCC4Q8TDY8 1250 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 RPGRQ92834 1020 aaKnown RBP17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 RBM27Q9P2N5 1060 aaKnown RBP17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 BRPF3Q9ULD4 1205 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 NSFL1CQ9UNZ2 370 aaKnown RBP17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 CCDC88AQ3V6T2 1871 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 GOLGA6L4A6NEF3 574 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 PLSCR1O15162 318 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 SERPINB2P05120 415 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 NASPP49321 788 aaPredicted RBP17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 PPP2R5BQ15173 497 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 PRR5LQ6MZQ0 368 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 FLAD1Q8NFF5 587 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 WDR66Q8TBY9 1149 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 SPATA32Q96LK8 384 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 HPS5Q9UPZ3 1129 aa17.29■□□□□ 0.36
ECHDC1-220ENST00000528402 CACNA1SQ13698 1873 aa17.28■□□□□ 0.36
ECHDC1-220ENST00000528402 ERICH2A1L162 156 aa17.28■□□□□ 0.36
ECHDC1-220ENST00000528402 SYCE3A1L190 88 aa17.28■□□□□ 0.36
ECHDC1-220ENST00000528402 ATP2B4P23634 1241 aa17.28■□□□□ 0.36
ECHDC1-220ENST00000528402 CYB5R4Q7L1T6 521 aa17.28■□□□□ 0.36
ECHDC1-220ENST00000528402 FERMT3Q86UX7 667 aa17.28■□□□□ 0.36
ECHDC1-220ENST00000528402 CERS3Q8IU89 383 aa17.28■□□□□ 0.36
ECHDC1-220ENST00000528402 RIOK1Q9BRS2 568 aaKnown RBP17.28■□□□□ 0.36
ECHDC1-220ENST00000528402 ANKIB1Q9P2G1 1089 aa17.28■□□□□ 0.36
ECHDC1-220ENST00000528402 IRS2Q9Y4H2 1338 aa17.27■□□□□ 0.36
ECHDC1-220ENST00000528402 B4E1Z4 1266 aa17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 TRIM37O94972 964 aa17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 HOXA10P31260 410 aaPredicted RBP17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 METAP2P50579 478 aaKnown RBP eCLIP17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 PPARAQ07869 468 aa17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 CCDC173Q0VFZ6 552 aa17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 TMEM67Q5HYA8 995 aa17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 ZNF804AQ7Z570 1209 aa17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 NSUN4Q96CB9 384 aaKnown RBP17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 CRAMP1Q96RY5 1269 aa17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 TSPY26PQ9H489 355 aa17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 NCOA5Q9HCD5 579 aaKnown RBP17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 ORC3Q9UBD5 711 aaPredicted RBP17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 IQSEC3Q9UPP2 1182 aaPredicted RBP17.27■□□□□ 0.35
ECHDC1-220ENST00000528402 KLRG2A4D1S0 409 aaPredicted RBP17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 CCDC69A6NI79 296 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 IFIT3O14879 490 aaKnown RBP17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 ZBTB43O43298 467 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 PRKAB2O43741 272 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 GSTO1P78417 241 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 TXNRD1Q16881 649 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 APOA5Q6Q788 366 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 NFXL1Q6ZNB6 911 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 TTC6Q86TZ1 520 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 LEO1Q8WVC0 666 aaPredicted RBP17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 WASF1Q92558 559 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 ESR2Q92731 530 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 C8orf76Q96K31 380 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 CRNKL1Q9BZJ0 848 aaKnown RBP17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 ATP8A2Q9NTI2 1148 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 ZSWIM5Q9P217 1185 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 TNRC6CQ9HCJ0 1690 aaKnown RBP17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 NID2Q14112 1375 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 MYH15Q9Y2K3 1946 aa17.26■□□□□ 0.35
ECHDC1-220ENST00000528402 COL1A1P02452 1464 aaPredicted RBP17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 KIAA1551Q9HCM1 1747 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 NEDD4P46934 1319 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 CCDC196A0A1B0GTZ2 297 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 KDM4AO75164 1064 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 SLC3A2P08195 630 aaKnown RBP17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 FDPSP14324 419 aaKnown RBP17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 CTDSPL2Q05D32 466 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 UVSSAQ2YD98 709 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 BRAPQ7Z569 592 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 NLGN1Q8N2Q7 840 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 MIGA1Q8NAN2 632 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 TDRD7Q8NHU6 1098 aaKnown RBP17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 LY9Q9HBG7 655 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 RCOR1Q9UKL0 485 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 SLC12A7Q9Y666 1083 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 MAST2Q6P0Q8 1798 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 DUOX1Q9NRD9 1551 aa17.25■□□□□ 0.35
ECHDC1-220ENST00000528402 LDHCP07864 332 aa17.24■□□□□ 0.35
ECHDC1-220ENST00000528402 FGRP09769 529 aa17.24■□□□□ 0.35
ECHDC1-220ENST00000528402 MECOMQ03112 1051 aa17.24■□□□□ 0.35
ECHDC1-220ENST00000528402 FBXO18Q8NFZ0 1043 aa17.24■□□□□ 0.35
ECHDC1-220ENST00000528402 GPHNQ9NQX3 736 aaPredicted RBP17.24■□□□□ 0.35
ECHDC1-220ENST00000528402 STK36Q9NRP7 1315 aa17.24■□□□□ 0.35
ECHDC1-220ENST00000528402 WTAPQ15007 396 aa17.23■□□□□ 0.35
ECHDC1-220ENST00000528402 SBK1Q52WX2 424 aa17.23■□□□□ 0.35
ECHDC1-220ENST00000528402 ADGRA1Q86SQ6 560 aa17.23■□□□□ 0.35
ECHDC1-220ENST00000528402 CCDC24Q8N4L8 307 aa17.23■□□□□ 0.35
ECHDC1-220ENST00000528402 PPP1R9BQ96SB3 815 aa17.23■□□□□ 0.35
ECHDC1-220ENST00000528402 RBSNQ9H1K0 784 aa17.23■□□□□ 0.35
ECHDC1-220ENST00000528402 DDX19AQ9NUU7 478 aaKnown RBP17.23■□□□□ 0.35
ECHDC1-220ENST00000528402 PODXL2Q9NZ53 605 aa17.23■□□□□ 0.35
ECHDC1-220ENST00000528402 TFCP2L1Q9NZI6 479 aa17.23■□□□□ 0.35
ECHDC1-220ENST00000528402 PANK2Q9BZ23 570 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms