RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 EVI5LQ96CN4 794 aa13.07□□□□□ -0.32
NEDD8-205ENST00000527046 PUS7LQ9H0K6 701 aaKnown RBP13.07□□□□□ -0.32
NEDD8-205ENST00000527046 MAST3O60307 1309 aa13.07□□□□□ -0.32
NEDD8-205ENST00000527046 CNTNAP1P78357 1384 aa13.07□□□□□ -0.32
NEDD8-205ENST00000527046 RFX7Q2KHR2 1363 aa13.07□□□□□ -0.32
NEDD8-205ENST00000527046 CDK5RAP2Q96SN8 1893 aa13.06□□□□□ -0.32
NEDD8-205ENST00000527046 RNF113AO15541 343 aaKnown RBP13.06□□□□□ -0.32
NEDD8-205ENST00000527046 WDHD1O75717 1129 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-205ENST00000527046 BTDP43251 543 aa13.06□□□□□ -0.32
NEDD8-205ENST00000527046 CACNB3P54284 484 aa13.06□□□□□ -0.32
NEDD8-205ENST00000527046 NFIAQ12857 509 aa13.06□□□□□ -0.32
NEDD8-205ENST00000527046 EAPPQ56P03 285 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-205ENST00000527046 ANGEL2Q5VTE6 544 aaKnown RBP13.06□□□□□ -0.32
NEDD8-205ENST00000527046 MAP1SQ66K74 1059 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-205ENST00000527046 LDHDQ86WU2 507 aa13.06□□□□□ -0.32
NEDD8-205ENST00000527046 DZIP1Q86YF9 867 aaKnown RBP13.06□□□□□ -0.32
NEDD8-205ENST00000527046 SEC62Q99442 399 aaKnown RBP13.06□□□□□ -0.32
NEDD8-205ENST00000527046 FAM198AQ9UFP1 575 aa13.06□□□□□ -0.32
NEDD8-205ENST00000527046 CLRN2A0PK11 232 aa13.05□□□□□ -0.32
NEDD8-205ENST00000527046 TOMM70O94826 608 aa13.05□□□□□ -0.32
NEDD8-205ENST00000527046 LDHCP07864 332 aa13.05□□□□□ -0.32
NEDD8-205ENST00000527046 RGS3P49796 1198 aa13.05□□□□□ -0.32
NEDD8-205ENST00000527046 RBM5P52756 815 aaKnown RBP eCLIP13.05□□□□□ -0.32
NEDD8-205ENST00000527046 ZMYM1Q5SVZ6 1142 aa13.05□□□□□ -0.32
NEDD8-205ENST00000527046 CDAN1Q8IWY9 1227 aa13.05□□□□□ -0.32
NEDD8-205ENST00000527046 SH3RF3Q8TEJ3 882 aaPredicted RBP13.05□□□□□ -0.32
NEDD8-205ENST00000527046 TEPSINQ96N21 525 aa13.05□□□□□ -0.32
NEDD8-205ENST00000527046 IL25Q9H293 177 aa13.05□□□□□ -0.32
NEDD8-205ENST00000527046 DDX4Q9NQI0 724 aaKnown RBP13.05□□□□□ -0.32
NEDD8-205ENST00000527046 USP40Q9NVE5 1235 aa13.05□□□□□ -0.32
NEDD8-205ENST00000527046 AATFQ9NY61 560 aaKnown RBP eCLIP13.05□□□□□ -0.32
NEDD8-205ENST00000527046 MKRN1Q9UHC7 482 aaKnown RBP13.05□□□□□ -0.32
NEDD8-205ENST00000527046 FOXP2O15409 715 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 GSTO1P78417 241 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 CHADLQ6NUI6 762 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 TMED8Q6PL24 325 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-205ENST00000527046 SH3BP5LQ7L8J4 393 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 USP48Q86UV5 1035 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 CNTROBQ8N137 903 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 LCORLQ8N3X6 602 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 MIGA1Q8NAN2 632 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 IDI2Q9BXS1 227 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 GLIS2Q9BZE0 524 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-205ENST00000527046 GGA3Q9NZ52 723 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 PITPNM2Q9BZ72 1349 aa13.04□□□□□ -0.32
NEDD8-205ENST00000527046 ADM5C9JUS6 153 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 M0R2C6 588 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 TRAF5O00463 557 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 PRKAB2O43741 272 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 FKBP1CQ5VVH2 108 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 PRAMEF18Q5VWM3 479 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 TICAM2Q86XR7 235 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 RBM46Q8TBY0 533 aaKnown RBP13.03□□□□□ -0.32
NEDD8-205ENST00000527046 APPBP2Q92624 585 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 RILPL2Q969X0 211 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 FAM227BQ96M60 508 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 STRBPQ96SI9 672 aaKnown RBP13.03□□□□□ -0.32
NEDD8-205ENST00000527046 FSD1Q9BTV5 496 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 PASKQ96RG2 1323 aa13.03□□□□□ -0.32
NEDD8-205ENST00000527046 FOCADQ5VW36 1801 aa13.02□□□□□ -0.32
NEDD8-205ENST00000527046 AK9Q5TCS8 1911 aa13.02□□□□□ -0.32
NEDD8-205ENST00000527046 A0A0D9SFI3 127 aa13.02□□□□□ -0.33
NEDD8-205ENST00000527046 TRIM6-TRIM34B2RNG4 842 aa13.02□□□□□ -0.33
NEDD8-205ENST00000527046 TCP10L2B9ZVM9 353 aa13.02□□□□□ -0.33
NEDD8-205ENST00000527046 NPM3O75607 178 aaKnown RBP13.02□□□□□ -0.33
NEDD8-205ENST00000527046 ZFYP08048 801 aaPredicted RBP13.02□□□□□ -0.33
NEDD8-205ENST00000527046 SLURP2P0DP57 97 aa13.02□□□□□ -0.33
NEDD8-205ENST00000527046 NMIQ13287 307 aaPredicted RBP13.02□□□□□ -0.33
NEDD8-205ENST00000527046 BMP2KLQ5H9B9 411 aa13.02□□□□□ -0.33
NEDD8-205ENST00000527046 SLF2Q8IX21 1173 aa13.02□□□□□ -0.33
NEDD8-205ENST00000527046 DEFB129Q9H1M3 183 aa13.02□□□□□ -0.33
NEDD8-205ENST00000527046 ARMT1Q9H993 441 aa13.02□□□□□ -0.33
NEDD8-205ENST00000527046 CLEC11AQ9Y240 323 aa13.02□□□□□ -0.33
NEDD8-205ENST00000527046 MAGEB6P1A0A0J9YX57 407 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 SMIM22K7EJ46 135 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 CHMLP26374 656 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 EVX2Q03828 476 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 RASA3Q14644 834 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 CST9Q5W186 159 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 ZSCAN25Q6NSZ9 544 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 CCDC129Q6ZRS4 1044 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 CDC37L1Q7L3B6 337 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 KRT26Q7Z3Y9 468 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 DCPSQ96C86 337 aaKnown RBP13.01□□□□□ -0.33
NEDD8-205ENST00000527046 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.01□□□□□ -0.33
NEDD8-205ENST00000527046 TMEM39BQ9GZU3 492 aa13.01□□□□□ -0.33
NEDD8-205ENST00000527046 SIPA1L1O43166 1804 aa13□□□□□ -0.33
NEDD8-205ENST00000527046 SSC5DA1L4H1 1573 aa13□□□□□ -0.33
NEDD8-205ENST00000527046 DDTLA6NHG4 134 aaPredicted RBP13□□□□□ -0.33
NEDD8-205ENST00000527046 GSG1L2A8MUP6 293 aa13□□□□□ -0.33
NEDD8-205ENST00000527046 MBD4O95243 580 aa13□□□□□ -0.33
NEDD8-205ENST00000527046 NBPF12Q5TAG4 269 aaPredicted RBP13□□□□□ -0.33
NEDD8-205ENST00000527046 ZNF589Q86UQ0 364 aaPredicted RBP13□□□□□ -0.33
NEDD8-205ENST00000527046 FAM83AQ86UY5 434 aa13□□□□□ -0.33
NEDD8-205ENST00000527046 TGFBRAP1Q8WUH2 860 aa13□□□□□ -0.33
NEDD8-205ENST00000527046 FAM151AQ8WW52 585 aa13□□□□□ -0.33
NEDD8-205ENST00000527046 VEZTQ9HBM0 779 aa13□□□□□ -0.33
NEDD8-205ENST00000527046 RPAP1Q9BWH6 1393 aaPredicted RBP12.99□□□□□ -0.33
NEDD8-205ENST00000527046 GPAA1O43292 621 aa12.99□□□□□ -0.33
NEDD8-205ENST00000527046 ENTPD3O75355 529 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms