RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 LYSMD3Q7Z3D4 306 aa10.13□□□□□ -0.79
NEDD8-203ENST00000524927 C1orf216Q8TAB5 229 aa10.13□□□□□ -0.79
NEDD8-203ENST00000524927 TAF1DQ9H5J8 278 aaPredicted RBP10.13□□□□□ -0.79
NEDD8-203ENST00000524927 RAB6BQ9NRW1 208 aa10.13□□□□□ -0.79
NEDD8-203ENST00000524927 PARP3Q9Y6F1 533 aa10.13□□□□□ -0.79
NEDD8-203ENST00000524927 COL6A3P12111 3177 aa10.12□□□□□ -0.79
NEDD8-203ENST00000524927 ITGB2P05107 769 aa10.12□□□□□ -0.79
NEDD8-203ENST00000524927 GRM1Q13255 1194 aa10.12□□□□□ -0.79
NEDD8-203ENST00000524927 SND1Q7KZF4 910 aaKnown RBP eCLIP10.12□□□□□ -0.79
NEDD8-203ENST00000524927 CNTROBQ8N137 903 aa10.12□□□□□ -0.79
NEDD8-203ENST00000524927 ARHGEF10LQ9HCE6 1279 aa10.12□□□□□ -0.79
NEDD8-203ENST00000524927 TRIOBPQ9H2D6 2365 aa10.12□□□□□ -0.79
NEDD8-203ENST00000524927 AOC2O75106 756 aa10.11□□□□□ -0.79
NEDD8-203ENST00000524927 WEE1P30291 646 aa10.11□□□□□ -0.79
NEDD8-203ENST00000524927 SERPINB4P48594 390 aa10.11□□□□□ -0.79
NEDD8-203ENST00000524927 DBN1Q16643 649 aa10.11□□□□□ -0.79
NEDD8-203ENST00000524927 SMARCC1Q92922 1105 aaPredicted RBP10.11□□□□□ -0.79
NEDD8-203ENST00000524927 MKNK1Q9BUB5 465 aa10.11□□□□□ -0.79
NEDD8-203ENST00000524927 SCN4AP35499 1836 aa10.1□□□□□ -0.79
NEDD8-203ENST00000524927 DDNO94850 711 aaPredicted RBP10.1□□□□□ -0.79
NEDD8-203ENST00000524927 CHRNA5P30532 468 aa10.1□□□□□ -0.79
NEDD8-203ENST00000524927 RNF144AP50876 292 aaPredicted RBP10.1□□□□□ -0.79
NEDD8-203ENST00000524927 FOXK2Q01167 660 aa10.1□□□□□ -0.79
NEDD8-203ENST00000524927 CCDC27Q2M243 656 aa10.1□□□□□ -0.79
NEDD8-203ENST00000524927 TAS1R3Q7RTX0 852 aa10.1□□□□□ -0.79
NEDD8-203ENST00000524927 GAS2L2Q8NHY3 880 aa10.1□□□□□ -0.79
NEDD8-203ENST00000524927 SCG3Q8WXD2 468 aaKnown RBP10.1□□□□□ -0.79
NEDD8-203ENST00000524927 ZNF837Q96EG3 531 aaPredicted RBP10.1□□□□□ -0.79
NEDD8-203ENST00000524927 DDX21Q9NR30 783 aaKnown RBP eCLIP10.1□□□□□ -0.79
NEDD8-203ENST00000524927 CNTNAP5Q8WYK1 1306 aa10.09□□□□□ -0.79
NEDD8-203ENST00000524927 NFAT5O94916 1531 aa10.09□□□□□ -0.79
NEDD8-203ENST00000524927 NFKBIEO00221 500 aa10.09□□□□□ -0.79
NEDD8-203ENST00000524927 ABL1P00519 1130 aa10.09□□□□□ -0.79
NEDD8-203ENST00000524927 NBPF1Q3BBV0 1214 aa10.09□□□□□ -0.79
NEDD8-203ENST00000524927 ADAMTSL1Q8N6G6 1762 aa10.09□□□□□ -0.79
NEDD8-203ENST00000524927 CCDC88AQ3V6T2 1871 aa10.08□□□□□ -0.8
NEDD8-203ENST00000524927 IGFBP4P22692 258 aa10.08□□□□□ -0.8
NEDD8-203ENST00000524927 KANK3Q6NY19 840 aa10.08□□□□□ -0.8
NEDD8-203ENST00000524927 PNMA8AQ86V59 439 aaPredicted RBP10.08□□□□□ -0.8
NEDD8-203ENST00000524927 ZCRB1Q8TBF4 217 aaKnown RBP10.08□□□□□ -0.8
NEDD8-203ENST00000524927 VTI1AQ96AJ9 217 aa10.08□□□□□ -0.8
NEDD8-203ENST00000524927 SLC4A9Q96Q91 983 aa10.08□□□□□ -0.8
NEDD8-203ENST00000524927 A6NJY4 79 aa10.07□□□□□ -0.8
NEDD8-203ENST00000524927 SMTNP53814 917 aa10.07□□□□□ -0.8
NEDD8-203ENST00000524927 FKBP5Q13451 457 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-203ENST00000524927 EAPPQ56P03 285 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-203ENST00000524927 TRAPPC3LQ5T215 181 aa10.07□□□□□ -0.8
NEDD8-203ENST00000524927 CTU1Q7Z7A3 348 aaKnown RBP10.07□□□□□ -0.8
NEDD8-203ENST00000524927 LINC00116Q8NCU8 138 aa10.07□□□□□ -0.8
NEDD8-203ENST00000524927 ANKRD24Q8TF21 1146 aa10.07□□□□□ -0.8
NEDD8-203ENST00000524927 CNKSR1Q969H4 720 aa10.07□□□□□ -0.8
NEDD8-203ENST00000524927 SCARF2Q96GP6 870 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-203ENST00000524927 XAGE2Q96GT9 111 aa10.07□□□□□ -0.8
NEDD8-203ENST00000524927 TSPAN10Q9H1Z9 355 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-203ENST00000524927 DICER1Q9UPY3 1922 aaKnown RBP10.06□□□□□ -0.8
NEDD8-203ENST00000524927 A0A1W2PRU2 124 aa10.06□□□□□ -0.8
NEDD8-203ENST00000524927 PPP1R12BO60237 982 aaPredicted RBP10.06□□□□□ -0.8
NEDD8-203ENST00000524927 PTCD1O75127 700 aaKnown RBP10.06□□□□□ -0.8
NEDD8-203ENST00000524927 IL2RAP01589 272 aa10.06□□□□□ -0.8
NEDD8-203ENST00000524927 GYS1P13807 737 aa10.06□□□□□ -0.8
NEDD8-203ENST00000524927 MAP1SQ66K74 1059 aaPredicted RBP10.06□□□□□ -0.8
NEDD8-203ENST00000524927 CIAPIN1Q6FI81 312 aa10.06□□□□□ -0.8
NEDD8-203ENST00000524927 NLRP3Q96P20 1036 aa10.06□□□□□ -0.8
NEDD8-203ENST00000524927 BIN2Q9UBW5 565 aaPredicted RBP10.06□□□□□ -0.8
NEDD8-203ENST00000524927 MKI67P46013 3256 aaKnown RBP10.05□□□□□ -0.8
NEDD8-203ENST00000524927 SOWAHDA6NJG2 315 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 MEN1O00255 615 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 EPHA4P54764 986 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 TLR1Q15399 786 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 PKN2Q16513 984 aaKnown RBP10.05□□□□□ -0.8
NEDD8-203ENST00000524927 TBCELQ5QJ74 424 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 SLC9A9Q8IVB4 645 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 TRIM22Q8IYM9 498 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 HHIPL1Q96JK4 782 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 ESYT1Q9BSJ8 1104 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 PRDM6Q9NQX0 595 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 SAGE1Q9NXZ1 904 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 SEPT3Q9UH03 358 aa10.05□□□□□ -0.8
NEDD8-203ENST00000524927 POU4F2Q12837 409 aa10.04□□□□□ -0.8
NEDD8-203ENST00000524927 NAA30Q147X3 362 aaPredicted RBP10.04□□□□□ -0.8
NEDD8-203ENST00000524927 TTLL6Q8N841 843 aa10.04□□□□□ -0.8
NEDD8-203ENST00000524927 GTF3C2Q8WUA4 911 aaPredicted RBP10.04□□□□□ -0.8
NEDD8-203ENST00000524927 ACDQ96AP0 544 aa10.04□□□□□ -0.8
NEDD8-203ENST00000524927 ANO2Q9NQ90 1003 aa10.04□□□□□ -0.8
NEDD8-203ENST00000524927 SCHIP1Q9P0W5 487 aaPredicted RBP10.04□□□□□ -0.8
NEDD8-203ENST00000524927 HACL1Q9UJ83 578 aa10.04□□□□□ -0.8
NEDD8-203ENST00000524927 LOC102724428A0A0B4J2F2 783 aa10.03□□□□□ -0.8
NEDD8-203ENST00000524927 EPHX2P34913 555 aa10.03□□□□□ -0.8
NEDD8-203ENST00000524927 SIK1P57059 783 aa10.03□□□□□ -0.8
NEDD8-203ENST00000524927 CLN3Q13286 438 aa10.03□□□□□ -0.8
NEDD8-203ENST00000524927 ZNF211Q13398 564 aaPredicted RBP10.03□□□□□ -0.8
NEDD8-203ENST00000524927 PLA2G4EQ3MJ16 856 aa10.03□□□□□ -0.8
NEDD8-203ENST00000524927 MPRIPQ6WCQ1 1025 aa10.03□□□□□ -0.8
NEDD8-203ENST00000524927 CAPN12Q6ZSI9 719 aa10.03□□□□□ -0.8
NEDD8-203ENST00000524927 GTPBP3Q969Y2 492 aaKnown RBP10.03□□□□□ -0.8
NEDD8-203ENST00000524927 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.03□□□□□ -0.8
NEDD8-203ENST00000524927 MBIPQ9NS73 344 aa10.03□□□□□ -0.8
NEDD8-203ENST00000524927 CHMP3Q9Y3E7 222 aa10.03□□□□□ -0.8
NEDD8-203ENST00000524927 RTCBQ9Y3I0 505 aaKnown RBP10.03□□□□□ -0.8
NEDD8-203ENST00000524927 INSRP06213 1382 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms