RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 ITPKAP23677 461 aa9.28□□□□□ -0.92
SKP1-213ENST00000524288 OSBPL7Q9BZF2 842 aa9.28□□□□□ -0.92
SKP1-213ENST00000524288 EHD4Q9H223 541 aa9.28□□□□□ -0.92
SKP1-213ENST00000524288 GADD45BO75293 160 aaPredicted RBP9.27□□□□□ -0.93
SKP1-213ENST00000524288 DLGAP3O95886 979 aa9.27□□□□□ -0.93
SKP1-213ENST00000524288 B3GALT4O96024 378 aa9.27□□□□□ -0.93
SKP1-213ENST00000524288 MAP4P27816 1152 aaKnown RBP9.27□□□□□ -0.93
SKP1-213ENST00000524288 SSTR4P31391 388 aa9.27□□□□□ -0.93
SKP1-213ENST00000524288 FANCCQ00597 558 aa9.27□□□□□ -0.93
SKP1-213ENST00000524288 ZNF423Q2M1K9 1284 aa9.27□□□□□ -0.93
SKP1-213ENST00000524288 SPRED3Q2MJR0 410 aa9.27□□□□□ -0.93
SKP1-213ENST00000524288 PRPF40BQ6NWY9 871 aaKnown RBP9.27□□□□□ -0.93
SKP1-213ENST00000524288 CPSF6Q16630 551 aaKnown RBP eCLIP9.26□□□□□ -0.93
SKP1-213ENST00000524288 NT5DC4Q86YG4 428 aa9.26□□□□□ -0.93
SKP1-213ENST00000524288 GIMAP7Q8NHV1 300 aa9.26□□□□□ -0.93
SKP1-213ENST00000524288 ZNF576Q9H609 170 aa9.26□□□□□ -0.93
SKP1-213ENST00000524288 C12orf49Q9H741 205 aa9.26□□□□□ -0.93
SKP1-213ENST00000524288 ZNF76P36508 570 aa9.25□□□□□ -0.93
SKP1-213ENST00000524288 ITGAEP38570 1179 aa9.25□□□□□ -0.93
SKP1-213ENST00000524288 POU4F3Q15319 338 aa9.25□□□□□ -0.93
SKP1-213ENST00000524288 SGO2Q562F6 1265 aa9.25□□□□□ -0.93
SKP1-213ENST00000524288 NXPE4Q6UWF7 544 aa9.25□□□□□ -0.93
SKP1-213ENST00000524288 METTL16Q86W50 562 aaKnown RBP9.25□□□□□ -0.93
SKP1-213ENST00000524288 RNF34Q969K3 372 aa9.25□□□□□ -0.93
SKP1-213ENST00000524288 CRELD1Q96HD1 420 aa9.25□□□□□ -0.93
SKP1-213ENST00000524288 YIPF2Q9BWQ6 316 aa9.25□□□□□ -0.93
SKP1-213ENST00000524288 TRAK1Q9UPV9 953 aa9.25□□□□□ -0.93
SKP1-213ENST00000524288 PRR19A6NJB7 356 aa9.24□□□□□ -0.93
SKP1-213ENST00000524288 RXRBP28702 533 aa9.24□□□□□ -0.93
SKP1-213ENST00000524288 ZC3H6P61129 1189 aaKnown RBP9.24□□□□□ -0.93
SKP1-213ENST00000524288 SOX4Q06945 474 aaPredicted RBP9.24□□□□□ -0.93
SKP1-213ENST00000524288 RAD51AP2Q09MP3 1159 aa9.24□□□□□ -0.93
SKP1-213ENST00000524288 NAALADL2Q58DX5 795 aa9.24□□□□□ -0.93
SKP1-213ENST00000524288 RPS26P11Q5JNZ5 115 aaPredicted RBP9.24□□□□□ -0.93
SKP1-213ENST00000524288 MEI1Q5TIA1 1274 aa9.24□□□□□ -0.93
SKP1-213ENST00000524288 C2CD4AQ8NCU7 369 aaPredicted RBP9.24□□□□□ -0.93
SKP1-213ENST00000524288 SHKBP1Q8TBC3 707 aa9.24□□□□□ -0.93
SKP1-213ENST00000524288 PSMG3-AS1Q96PY0 264 aa9.24□□□□□ -0.93
SKP1-213ENST00000524288 KRTAP4-8Q9BYQ9 185 aa9.24□□□□□ -0.93
SKP1-213ENST00000524288 USP17L7P0C7H9 530 aa9.23□□□□□ -0.93
SKP1-213ENST00000524288 MAOBP27338 520 aa9.23□□□□□ -0.93
SKP1-213ENST00000524288 USP11P51784 963 aa9.23□□□□□ -0.93
SKP1-213ENST00000524288 AP3B2Q13367 1082 aa9.23□□□□□ -0.93
SKP1-213ENST00000524288 FRMD6Q96NE9 622 aa9.23□□□□□ -0.93
SKP1-213ENST00000524288 CORO1BQ9BR76 489 aa9.23□□□□□ -0.93
SKP1-213ENST00000524288 BCO2Q9BYV7 579 aa9.23□□□□□ -0.93
SKP1-213ENST00000524288 ABCB6Q9NP58 842 aa9.23□□□□□ -0.93
SKP1-213ENST00000524288 FAM95CA0A1B0GW59 222 aa9.22□□□□□ -0.93
SKP1-213ENST00000524288 LOC105371045A0A1W2PR82 267 aa9.22□□□□□ -0.93
SKP1-213ENST00000524288 ADH5P11766 374 aa9.22□□□□□ -0.93
SKP1-213ENST00000524288 SPINK2P20155 84 aa9.22□□□□□ -0.93
SKP1-213ENST00000524288 PAOXQ6QHF9 649 aa9.22□□□□□ -0.93
SKP1-213ENST00000524288 EZH1Q92800 747 aaPredicted RBP9.22□□□□□ -0.93
SKP1-213ENST00000524288 TRIM56Q9BRZ2 755 aaKnown RBP9.22□□□□□ -0.93
SKP1-213ENST00000524288 SYNGAP1Q96PV0 1343 aa9.22□□□□□ -0.93
SKP1-213ENST00000524288 MED26O95402 600 aa9.21□□□□□ -0.94
SKP1-213ENST00000524288 DRD2P14416 443 aa9.21□□□□□ -0.94
SKP1-213ENST00000524288 GRM2Q14416 872 aa9.21□□□□□ -0.94
SKP1-213ENST00000524288 MFSD14AQ96MC6 490 aa9.21□□□□□ -0.94
SKP1-213ENST00000524288 C8orf37Q96NL8 207 aa9.21□□□□□ -0.94
SKP1-213ENST00000524288 ATG3Q9NT62 314 aa9.21□□□□□ -0.94
SKP1-213ENST00000524288 PCDHGB7Q9Y5F8 929 aa9.21□□□□□ -0.94
SKP1-213ENST00000524288 TMEM238LA0A1B0GVL6 79 aa9.2□□□□□ -0.94
SKP1-213ENST00000524288 WDR64B1ANS9 1081 aa9.2□□□□□ -0.94
SKP1-213ENST00000524288 ZNF394Q53GI3 561 aa9.2□□□□□ -0.94
SKP1-213ENST00000524288 DTX1Q86Y01 620 aa9.2□□□□□ -0.94
SKP1-213ENST00000524288 METTL22Q9BUU2 404 aaPredicted RBP9.2□□□□□ -0.94
SKP1-213ENST00000524288 METTL5Q9NRN9 209 aaKnown RBP9.2□□□□□ -0.94
SKP1-213ENST00000524288 FAM8A1Q9UBU6 413 aa9.2□□□□□ -0.94
SKP1-213ENST00000524288 HNRNPUQ00839 825 aaKnown RBP eCLIP9.19□□□□□ -0.94
SKP1-213ENST00000524288 CDPF1Q6NVV7 123 aa9.19□□□□□ -0.94
SKP1-213ENST00000524288 FBLIM1Q8WUP2 373 aa9.19□□□□□ -0.94
SKP1-213ENST00000524288 ACBD3Q9H3P7 528 aa9.19□□□□□ -0.94
SKP1-213ENST00000524288 CCSER2Q9H7U1 834 aa9.19□□□□□ -0.94
SKP1-213ENST00000524288 PIM2Q9P1W9 311 aa9.19□□□□□ -0.94
SKP1-213ENST00000524288 PPP1R1BQ9UD71 204 aaPredicted RBP9.19□□□□□ -0.94
SKP1-213ENST00000524288 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.18□□□□□ -0.94
SKP1-213ENST00000524288 CTSBP07858 339 aa9.18□□□□□ -0.94
SKP1-213ENST00000524288 TNNI2P48788 182 aa9.18□□□□□ -0.94
SKP1-213ENST00000524288 NFKBIBQ15653 356 aa9.18□□□□□ -0.94
SKP1-213ENST00000524288 GLIS3Q8NEA6 775 aa9.18□□□□□ -0.94
SKP1-213ENST00000524288 RAD18Q9NS91 495 aa9.18□□□□□ -0.94
SKP1-213ENST00000524288 PPP4R2Q9NY27 417 aa9.18□□□□□ -0.94
SKP1-213ENST00000524288 ACTL7BQ9Y614 415 aa9.18□□□□□ -0.94
SKP1-213ENST00000524288 GIPC1O14908 333 aa9.17□□□□□ -0.94
SKP1-213ENST00000524288 XRCC5P13010 732 aaKnown RBP9.17□□□□□ -0.94
SKP1-213ENST00000524288 MAP7Q14244 749 aa9.17□□□□□ -0.94
SKP1-213ENST00000524288 OSBPL1AQ9BXW6 950 aa9.17□□□□□ -0.94
SKP1-213ENST00000524288 GSX1Q9H4S2 264 aaPredicted RBP9.17□□□□□ -0.94
SKP1-213ENST00000524288 CAPN10Q9HC96 672 aa9.17□□□□□ -0.94
SKP1-213ENST00000524288 LEMD3Q9Y2U8 911 aa9.17□□□□□ -0.94
SKP1-213ENST00000524288 F13BP05160 661 aa9.16□□□□□ -0.94
SKP1-213ENST00000524288 FCGRTP55899 365 aa9.16□□□□□ -0.94
SKP1-213ENST00000524288 TAF1CQ15572 869 aaPredicted RBP9.16□□□□□ -0.94
SKP1-213ENST00000524288 SREK1Q8WXA9 508 aaKnown RBP9.16□□□□□ -0.94
SKP1-213ENST00000524288 GGT7Q9UJ14 662 aa9.16□□□□□ -0.94
SKP1-213ENST00000524288 TTF2Q9UNY4 1162 aaKnown RBP9.16□□□□□ -0.94
SKP1-213ENST00000524288 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.16□□□□□ -0.94
SKP1-213ENST00000524288 F6X3S4 739 aa9.15□□□□□ -0.94
SKP1-213ENST00000524288 GP2P55259 537 aaKnown RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms