RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 DCPSQ96C86 337 aaKnown RBP18.52■□□□□ 0.56
LSM1-203ENST00000520755 TDRD3Q9H7E2 651 aaKnown RBP18.52■□□□□ 0.56
LSM1-203ENST00000520755 NAV1Q8NEY1 1877 aa18.52■□□□□ 0.55
LSM1-203ENST00000520755 GAKO14976 1311 aa18.51■□□□□ 0.55
LSM1-203ENST00000520755 LDHCP07864 332 aa18.51■□□□□ 0.55
LSM1-203ENST00000520755 APOBEC3HQ6NTF7 200 aaKnown RBP18.51■□□□□ 0.55
LSM1-203ENST00000520755 VEZTQ9HBM0 779 aa18.51■□□□□ 0.55
LSM1-203ENST00000520755 PGAP2Q9UHJ9 254 aa18.51■□□□□ 0.55
LSM1-203ENST00000520755 SCAF8Q9UPN6 1271 aaKnown RBP18.51■□□□□ 0.55
LSM1-203ENST00000520755 TCRBV5S4A2TA0A5A2 114 aa18.5■□□□□ 0.55
LSM1-203ENST00000520755 PDE6AP16499 860 aa18.5■□□□□ 0.55
LSM1-203ENST00000520755 CYP7A1P22680 504 aa18.5■□□□□ 0.55
LSM1-203ENST00000520755 ADD2P35612 726 aa18.5■□□□□ 0.55
LSM1-203ENST00000520755 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.5■□□□□ 0.55
LSM1-203ENST00000520755 ZNF70Q9UC06 446 aaPredicted RBP18.5■□□□□ 0.55
LSM1-203ENST00000520755 BAZ2AQ9UIF9 1905 aaKnown RBP18.5■□□□□ 0.55
LSM1-203ENST00000520755 LAMB1P07942 1786 aa18.5■□□□□ 0.55
LSM1-203ENST00000520755 LAMA4Q16363 1823 aa18.49■□□□□ 0.55
LSM1-203ENST00000520755 BTDP43251 543 aa18.49■□□□□ 0.55
LSM1-203ENST00000520755 SPDYE2Q495Y8 402 aa18.49■□□□□ 0.55
LSM1-203ENST00000520755 SLC9C2Q5TAH2 1124 aa18.49■□□□□ 0.55
LSM1-203ENST00000520755 KRT26Q7Z3Y9 468 aa18.49■□□□□ 0.55
LSM1-203ENST00000520755 ADGRA1Q86SQ6 560 aa18.49■□□□□ 0.55
LSM1-203ENST00000520755 FAM163AQ96GL9 167 aaPredicted RBP18.49■□□□□ 0.55
LSM1-203ENST00000520755 GLIS2Q9BZE0 524 aaPredicted RBP18.49■□□□□ 0.55
LSM1-203ENST00000520755 IL25Q9H293 177 aa18.49■□□□□ 0.55
LSM1-203ENST00000520755 PITPNM2Q9BZ72 1349 aa18.49■□□□□ 0.55
LSM1-203ENST00000520755 TRPM7Q96QT4 1865 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 A0A0D9SFI3 127 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 ADM5C9JUS6 153 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 IGSF3O75054 1194 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 CDC45O75419 566 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 CHMLP26374 656 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 CACNB3P54284 484 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 CDC42EP5Q6NZY7 148 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 USP48Q86UV5 1035 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 APOBEC3FQ8IUX4 373 aaKnown RBP18.48■□□□□ 0.55
LSM1-203ENST00000520755 SULF1Q8IWU6 871 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 NOL10Q9BSC4 688 aaKnown RBP18.48■□□□□ 0.55
LSM1-203ENST00000520755 USP40Q9NVE5 1235 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 TMOD2Q9NZR1 351 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 ZNF532Q9HCE3 1301 aa18.48■□□□□ 0.55
LSM1-203ENST00000520755 GPR75-ASB3A0A0A6YYF3 556 aa18.47■□□□□ 0.55
LSM1-203ENST00000520755 RNF113AO15541 343 aaKnown RBP18.47■□□□□ 0.55
LSM1-203ENST00000520755 FSTL1Q12841 308 aa18.47■□□□□ 0.55
LSM1-203ENST00000520755 NMIQ13287 307 aaPredicted RBP18.47■□□□□ 0.55
LSM1-203ENST00000520755 C8orf34Q49A92 452 aa18.47■□□□□ 0.55
LSM1-203ENST00000520755 ZMYM1Q5SVZ6 1142 aa18.47■□□□□ 0.55
LSM1-203ENST00000520755 CDC37L1Q7L3B6 337 aa18.47■□□□□ 0.55
LSM1-203ENST00000520755 MIGA1Q8NAN2 632 aa18.47■□□□□ 0.55
LSM1-203ENST00000520755 FAM227BQ96M60 508 aa18.47■□□□□ 0.55
LSM1-203ENST00000520755 AATFQ9NY61 560 aaKnown RBP eCLIP18.47■□□□□ 0.55
LSM1-203ENST00000520755 MYH1P12882 1939 aa18.47■□□□□ 0.55
LSM1-203ENST00000520755 TCP10L2B9ZVM9 353 aa18.46■□□□□ 0.55
LSM1-203ENST00000520755 UBE3CQ15386 1083 aa18.46■□□□□ 0.55
LSM1-203ENST00000520755 ZSCAN25Q6NSZ9 544 aa18.46■□□□□ 0.55
LSM1-203ENST00000520755 DLK2Q6UY11 383 aa18.46■□□□□ 0.55
LSM1-203ENST00000520755 TICAM2Q86XR7 235 aa18.46■□□□□ 0.55
LSM1-203ENST00000520755 SEC62Q99442 399 aaKnown RBP18.46■□□□□ 0.55
LSM1-203ENST00000520755 M0R2C6 588 aa18.45■□□□□ 0.54
LSM1-203ENST00000520755 TRAF5O00463 557 aa18.45■□□□□ 0.54
LSM1-203ENST00000520755 BAG3O95817 575 aa18.45■□□□□ 0.54
LSM1-203ENST00000520755 ITGBL1O95965 494 aaPredicted RBP18.45■□□□□ 0.54
LSM1-203ENST00000520755 ZFYP08048 801 aaPredicted RBP18.45■□□□□ 0.54
LSM1-203ENST00000520755 APPBP2Q92624 585 aa18.45■□□□□ 0.54
LSM1-203ENST00000520755 OSBP2Q969R2 916 aa18.45■□□□□ 0.54
LSM1-203ENST00000520755 DYNLL1P63167 89 aaKnown RBP18.44■□□□□ 0.54
LSM1-203ENST00000520755 FMR1Q06787 632 aaKnown RBP eCLIP18.44■□□□□ 0.54
LSM1-203ENST00000520755 TNFAIP1Q13829 316 aa18.44■□□□□ 0.54
LSM1-203ENST00000520755 TMED8Q6PL24 325 aaPredicted RBP18.44■□□□□ 0.54
LSM1-203ENST00000520755 SH3RF3Q8TEJ3 882 aaPredicted RBP18.44■□□□□ 0.54
LSM1-203ENST00000520755 PUS7LQ9H0K6 701 aaKnown RBP18.44■□□□□ 0.54
LSM1-203ENST00000520755 DIAPH3Q9NSV4 1193 aa18.44■□□□□ 0.54
LSM1-203ENST00000520755 MAGEB6P1A0A0J9YX57 407 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 HIP1O00291 1037 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 TNNI2P48788 182 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 RHBDL3P58872 404 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 NFIAQ12857 509 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 RASA3Q14644 834 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 LRRFIP1Q32MZ4 808 aaKnown RBP18.43■□□□□ 0.54
LSM1-203ENST00000520755 PRAMEF18Q5VWM3 479 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 CWC27Q6UX04 472 aaKnown RBP18.43■□□□□ 0.54
LSM1-203ENST00000520755 ZNF589Q86UQ0 364 aaPredicted RBP18.43■□□□□ 0.54
LSM1-203ENST00000520755 TEX11Q8IYF3 940 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 DEFB129Q9H1M3 183 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 SIPA1L1O43166 1804 aa18.43■□□□□ 0.54
LSM1-203ENST00000520755 PLCG2P16885 1265 aa18.42■□□□□ 0.54
LSM1-203ENST00000520755 PPP4CP60510 307 aa18.42■□□□□ 0.54
LSM1-203ENST00000520755 TCP10Q12799 353 aa18.42■□□□□ 0.54
LSM1-203ENST00000520755 CCDC129Q6ZRS4 1044 aa18.42■□□□□ 0.54
LSM1-203ENST00000520755 CDCA5Q96FF9 252 aa18.42■□□□□ 0.54
LSM1-203ENST00000520755 RIOK1Q9BRS2 568 aaKnown RBP18.42■□□□□ 0.54
LSM1-203ENST00000520755 ESYT1Q9BSJ8 1104 aa18.42■□□□□ 0.54
LSM1-203ENST00000520755 ZNF408Q9H9D4 720 aa18.42■□□□□ 0.54
LSM1-203ENST00000520755 RAD50Q92878 1312 aa18.42■□□□□ 0.54
LSM1-203ENST00000520755 CNTNAP1P78357 1384 aa18.42■□□□□ 0.54
LSM1-203ENST00000520755 SGSM2O43147 1006 aa18.41■□□□□ 0.54
LSM1-203ENST00000520755 C1QTNF8P60827 252 aa18.41■□□□□ 0.54
LSM1-203ENST00000520755 PICALMQ13492 652 aa18.41■□□□□ 0.54
LSM1-203ENST00000520755 FKBP1CQ5VVH2 108 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms