RNA–Protein interactions for RNA: ENST00000514488.1

MATR3-224, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 564 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-224	ENST00000514488	VPS33B	Q9H267	617 aa		11.35	□□□□□ -0.59
MATR3-224	ENST00000514488	SCN9A	Q15858	1988 aa		11.35	□□□□□ -0.59
MATR3-224	ENST00000514488	LRRC37A	A6NMS7	1700 aa		11.35	□□□□□ -0.59
MATR3-224	ENST00000514488	CEP290	O15078	2479 aa		11.34	□□□□□ -0.59
MATR3-224	ENST00000514488	TAF7	Q15545	349 aa	Predicted RBP	11.34	□□□□□ -0.59
MATR3-224	ENST00000514488	PPP2R2D	Q66LE6	453 aa		11.34	□□□□□ -0.59
MATR3-224	ENST00000514488	C2orf69	Q8N8R5	385 aa		11.34	□□□□□ -0.59
MATR3-224	ENST00000514488	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.34	□□□□□ -0.59
MATR3-224	ENST00000514488	CSRNP1	Q96S65	589 aa		11.34	□□□□□ -0.59
MATR3-224	ENST00000514488	PSMD14	O00487	310 aa		11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	AXIN1	O15169	862 aa		11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	VARS	P26640	1264 aa	Known RBP	11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	TPRN	Q4KMQ1	711 aa		11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	ZNF787	Q6DD87	383 aa		11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	PPP1R42	Q7Z4L9	355 aa		11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	SP8	Q8IXZ3	490 aa		11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	ZNF428	Q96B54	188 aa		11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	THUMPD2	Q9BTF0	503 aa	Known RBP	11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	ASTN2	O75129	1339 aa	Predicted RBP	11.33	□□□□□ -0.6
MATR3-224	ENST00000514488	DDX60	Q8IY21	1712 aa	Known RBP	11.32	□□□□□ -0.6
MATR3-224	ENST00000514488	HCLS1	P14317	486 aa	Predicted RBP	11.32	□□□□□ -0.6
MATR3-224	ENST00000514488	UTP14A	Q9BVJ6	771 aa	Known RBP	11.32	□□□□□ -0.6
MATR3-224	ENST00000514488	DBNDD1	Q9H9R9	158 aa		11.32	□□□□□ -0.6
MATR3-224	ENST00000514488	GOPC	Q9HD26	462 aa		11.32	□□□□□ -0.6
MATR3-224	ENST00000514488	COL4A1	P02462	1669 aa		11.32	□□□□□ -0.6
MATR3-224	ENST00000514488	KIAA0100	Q14667	2235 aa	Known RBP	11.32	□□□□□ -0.6
MATR3-224	ENST00000514488	BBOX1	O75936	387 aa		11.31	□□□□□ -0.6
MATR3-224	ENST00000514488	ALDH1A1	P00352	501 aa		11.31	□□□□□ -0.6
MATR3-224	ENST00000514488	SLC10A5	Q5PT55	438 aa		11.31	□□□□□ -0.6
MATR3-224	ENST00000514488	RASAL3	Q86YV0	1011 aa		11.31	□□□□□ -0.6
MATR3-224	ENST00000514488	ARMC2	Q8NEN0	867 aa		11.31	□□□□□ -0.6
MATR3-224	ENST00000514488	DCPS	Q96C86	337 aa	Known RBP	11.31	□□□□□ -0.6
MATR3-224	ENST00000514488	KCNQ5	Q9NR82	932 aa		11.31	□□□□□ -0.6
MATR3-224	ENST00000514488	BRCA2	P51587	3418 aa		11.31	□□□□□ -0.6
MATR3-224	ENST00000514488	TBC1D8	O95759	1140 aa		11.3	□□□□□ -0.6
MATR3-224	ENST00000514488	ANXA1	P04083	346 aa		11.3	□□□□□ -0.6
MATR3-224	ENST00000514488	EIF4A1	P60842	406 aa	Known RBP	11.3	□□□□□ -0.6
MATR3-224	ENST00000514488	PARP10	Q53GL7	1025 aa		11.3	□□□□□ -0.6
MATR3-224	ENST00000514488	DPF2	Q92785	391 aa		11.3	□□□□□ -0.6
MATR3-224	ENST00000514488	CDCA5	Q96FF9	252 aa		11.3	□□□□□ -0.6
MATR3-224	ENST00000514488	CFAP53	Q96M91	514 aa		11.3	□□□□□ -0.6
MATR3-224	ENST00000514488	GGA3	Q9NZ52	723 aa		11.3	□□□□□ -0.6
MATR3-224	ENST00000514488	RTL9	Q8NET4	1388 aa		11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	PAPPA2	Q9BXP8	1791 aa		11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	HTATSF1	O43719	755 aa	Known RBP	11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	CTDSPL2	Q05D32	466 aa		11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	GRAP	Q13588	217 aa		11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	PROSER3	Q2NL68	480 aa		11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	KIF4B	Q2VIQ3	1234 aa		11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	MOB2	Q70IA6	237 aa		11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	DDX46	Q7L014	1031 aa	Known RBP	11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	GRAPL	Q8TC17	118 aa	Predicted RBP	11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	HDAC9	Q9UKV0	1011 aa		11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	SCAF8	Q9UPN6	1271 aa	Known RBP	11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	NUDC	Q9Y266	331 aa		11.29	□□□□□ -0.6
MATR3-224	ENST00000514488	TRIOBP	Q9H2D6	2365 aa		11.28	□□□□□ -0.6
MATR3-224	ENST00000514488	PSME4	Q14997	1843 aa		11.28	□□□□□ -0.6
MATR3-224	ENST00000514488	WASHC4	Q2M389	1173 aa		11.28	□□□□□ -0.6
MATR3-224	ENST00000514488	LRP10	Q7Z4F1	713 aa		11.28	□□□□□ -0.6
MATR3-224	ENST00000514488	HPS1	Q92902	700 aa		11.28	□□□□□ -0.6
MATR3-224	ENST00000514488	SZT2	Q5T011	3432 aa		11.28	□□□□□ -0.6
MATR3-224	ENST00000514488	ECE2	O60344	883 aa		11.27	□□□□□ -0.61
MATR3-224	ENST00000514488	EIF2S2	P20042	333 aa	Known RBP	11.27	□□□□□ -0.61
MATR3-224	ENST00000514488	HABP4	Q5JVS0	413 aa	Known RBP	11.27	□□□□□ -0.61
MATR3-224	ENST00000514488	NLRP10	Q86W26	655 aa		11.27	□□□□□ -0.61
MATR3-224	ENST00000514488	POLL	Q9UGP5	575 aa		11.27	□□□□□ -0.61
MATR3-224	ENST00000514488	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.27	□□□□□ -0.61
MATR3-224	ENST00000514488	WASF2	Q9Y6W5	498 aa		11.27	□□□□□ -0.61
MATR3-224	ENST00000514488	RPS12	P25398	132 aa	Known RBP	11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	GPSM2	P81274	684 aa		11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	PKN2	Q16513	984 aa	Known RBP	11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	ANGEL2	Q5VTE6	544 aa	Known RBP	11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	BPHL	Q86WA6	291 aa	Predicted RBP	11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	FAM174A	Q8TBP5	190 aa		11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	PNISR	Q8TF01	805 aa	Known RBP	11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	CELF1	Q92879	486 aa	Known RBP	11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	FOXJ1	Q92949	421 aa		11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	GCC1	Q96CN9	775 aa		11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	TRMT112	Q9UI30	125 aa	Known RBP	11.26	□□□□□ -0.61
MATR3-224	ENST00000514488		A0A0C4DFX4	3053 aa		11.26	□□□□□ -0.61
MATR3-224	ENST00000514488	AIMP1	Q12904	312 aa	Known RBP	11.25	□□□□□ -0.61
MATR3-224	ENST00000514488	PRAMEF18	Q5VWM3	479 aa		11.25	□□□□□ -0.61
MATR3-224	ENST00000514488	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.25	□□□□□ -0.61
MATR3-224	ENST00000514488	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.25	□□□□□ -0.61
MATR3-224	ENST00000514488	DACH1	Q9UI36	760 aa		11.25	□□□□□ -0.61
MATR3-224	ENST00000514488	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	UBE2Q2L	H0YL09	131 aa		11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	GPR25	O00155	361 aa		11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	PPP2R1A	P30153	589 aa		11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	SCARF1	Q14162	830 aa		11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	IL27	Q8NEV9	243 aa		11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	R3HDML	Q9H3Y0	253 aa		11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	ERBB4	Q15303	1308 aa		11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	SH3TC1	Q8TE82	1336 aa		11.24	□□□□□ -0.61
MATR3-224	ENST00000514488	AGER	Q15109	404 aa		11.23	□□□□□ -0.61
MATR3-224	ENST00000514488	COPS6	Q7L5N1	327 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms