RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 MYL5Q02045 173 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 APOA5Q6Q788 366 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 SLC26A6Q9BXS9 759 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 PIH1D3Q9NQM4 214 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 STRN4Q9NRL3 753 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 TRIM29Q14134 588 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 DNAJC10Q8IXB1 793 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 GREM2Q9H772 168 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 SIPA1L3O60292 1781 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 ZBTB43O43298 467 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 TOP1P11387 765 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 RRP12Q5JTH9 1297 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 CMTR1Q8N1G2 835 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 EPC1Q9H2F5 836 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 PHRF1Q9P1Y6 1649 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 GOLGA8AA7E2F4 631 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 ZNF827Q17R98 1081 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 TMEM67Q5HYA8 995 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 OLFM4Q6UX06 510 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 JMYQ8N9B5 988 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 L2HGDHQ9H9P8 463 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 ZNF532Q9HCE3 1301 aa10.67□□□□□ -0.7
LIMCH1-215ENST00000512632 ADD2P35612 726 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 PDE4BQ07343 736 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 PTPAQ15257 358 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 CCDC102BQ68D86 513 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 METTL16Q86W50 562 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 ZKSCAN3Q9BRR0 538 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 KCNH3Q9ULD8 1083 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 WWC3Q9ULE0 1092 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 BTBD18B2RXH4 712 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 ITGA6P23229 1130 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 GABPB1Q06547 395 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 UBXN4Q92575 508 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 TUBE1Q9UJT0 475 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 KCNJ14Q9UNX9 436 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 ZMYM6O95789 1325 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 ERICH4A6NGS2 130 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 SH2B2O14492 632 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 IKBKBO14920 756 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 PHKA1P46020 1223 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 GRIN1Q05586 938 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 CTDSPL2Q05D32 466 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 TERF2Q15554 542 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 MNS1Q8NEH6 495 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 CARD6Q9BX69 1037 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 HPSEQ9Y251 543 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 IFIT3O14879 490 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 RANBP6O60518 1105 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 CDK11BP21127 795 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 HLFQ16534 295 aa10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 TRMT44Q8IYL2 757 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-215ENST00000512632 CLCN6P51797 869 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 GRAMD1CQ8IYS0 662 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 KCND1Q9NSA2 647 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 ASAP1Q9ULH1 1129 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 RIPOR2Q9Y4F9 1068 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 CDKL5O76039 1030 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 BMP6P22004 513 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 GUCY1A2P33402 732 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 AIDAQ96BJ3 306 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 AFDNP55196 1824 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 LAMA4Q16363 1823 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 FANCGO15287 622 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 PDE6AP16499 860 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 TICAM2Q86XR7 235 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 FAM217BQ9NTX9 383 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 ZSWIM5Q9P217 1185 aa10.65□□□□□ -0.7
LIMCH1-215ENST00000512632 ERVV-2B6SEH9 535 aa10.65□□□□□ -0.71
LIMCH1-215ENST00000512632 PCCAP05165 728 aaPredicted RBP10.65□□□□□ -0.71
LIMCH1-215ENST00000512632 ADKP55263 362 aaKnown RBP10.65□□□□□ -0.71
LIMCH1-215ENST00000512632 CCDC93Q567U6 631 aa10.65□□□□□ -0.71
LIMCH1-215ENST00000512632 KIF6Q6ZMV9 814 aa10.65□□□□□ -0.71
LIMCH1-215ENST00000512632 KRBA2Q6ZNG9 492 aa10.65□□□□□ -0.71
LIMCH1-215ENST00000512632 TTLL11Q8NHH1 800 aa10.65□□□□□ -0.71
LIMCH1-215ENST00000512632 TIGD1Q96MW7 591 aa10.65□□□□□ -0.71
LIMCH1-215ENST00000512632 MAP3K14Q99558 947 aa10.65□□□□□ -0.71
LIMCH1-215ENST00000512632 PPP6R2O75170 966 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 TRIM65Q6PJ69 517 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 IGDCC4Q8TDY8 1250 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 SLC12A7Q9Y666 1083 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 PCDH11XQ9BZA7 1347 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 PCDH11YQ9BZA8 1340 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 SCN11AQ9UI33 1791 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 CBFA2T2O43439 604 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 NTRK3Q16288 839 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 ZBTB38Q8NAP3 1195 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 ZBTB9Q96C00 473 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 CPDO75976 1380 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 CSF1RP07333 972 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 RESP18Q5W5W9 173 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 VSTM4Q8IW00 320 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 REXO1L1PQ8IX06 675 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 INTS13Q9NVM9 706 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 TBC1D2BQ9UPU7 963 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 POLR2DO15514 142 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms