RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 FOXD4L4Q8WXT5 416 aaPredicted RBP7.05□□□□□ -1.28
HMGB3P13-201ENST00000511263 DUSP9Q99956 384 aaKnown RBP7.05□□□□□ -1.28
HMGB3P13-201ENST00000511263 BCL2L13Q9BXK5 485 aa7.05□□□□□ -1.28
HMGB3P13-201ENST00000511263 AK5Q9Y6K8 562 aa7.05□□□□□ -1.28
HMGB3P13-201ENST00000511263 PRR19A6NJB7 356 aa7.04□□□□□ -1.28
HMGB3P13-201ENST00000511263 ADAM11O75078 769 aa7.04□□□□□ -1.28
HMGB3P13-201ENST00000511263 TXKP42681 527 aa7.04□□□□□ -1.28
HMGB3P13-201ENST00000511263 ZNF423Q2M1K9 1284 aa7.04□□□□□ -1.28
HMGB3P13-201ENST00000511263 UBASH3BQ8TF42 649 aa7.04□□□□□ -1.28
HMGB3P13-201ENST00000511263 RAD18Q9NS91 495 aa7.04□□□□□ -1.28
HMGB3P13-201ENST00000511263 WWC3Q9ULE0 1092 aa7.04□□□□□ -1.28
HMGB3P13-201ENST00000511263 SORBS3O60504 671 aa7.03□□□□□ -1.28
HMGB3P13-201ENST00000511263 RLBP1P12271 317 aa7.03□□□□□ -1.28
HMGB3P13-201ENST00000511263 RNF43Q68DV7 783 aa7.03□□□□□ -1.28
HMGB3P13-201ENST00000511263 PI16Q6UXB8 463 aa7.03□□□□□ -1.28
HMGB3P13-201ENST00000511263 MYRFLQ96LU7 910 aa7.03□□□□□ -1.28
HMGB3P13-201ENST00000511263 YIPF2Q9BWQ6 316 aa7.03□□□□□ -1.28
HMGB3P13-201ENST00000511263 CCDC9Q9Y3X0 531 aaKnown RBP7.03□□□□□ -1.28
HMGB3P13-201ENST00000511263 GAS2O43903 313 aaKnown RBP7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 USP17L7P0C7H9 530 aa7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 LMNB1P20700 586 aa7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 DAB2P98082 770 aa7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 LRRC14Q15048 493 aa7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 SCARA3Q6AZY7 606 aa7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 TMC4Q7Z404 712 aa7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 PARP2Q9UGN5 583 aa7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 TTF2Q9UNY4 1162 aaKnown RBP7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 HIF3AQ9Y2N7 669 aa7.02□□□□□ -1.29
HMGB3P13-201ENST00000511263 LOC100289279A0A1B0GTE1 492 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 CENPBP07199 599 aaPredicted RBP7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 SLFN14P0C7P3 912 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 MAOBP27338 520 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 PDE3AQ14432 1141 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 FBXO33Q7Z6M2 555 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 DTX1Q86Y01 620 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 SMG8Q8ND04 991 aaKnown RBP7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 DBNDD2Q9BQY9 259 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 OSBPL7Q9BZF2 842 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 SUGCTQ9HAC7 445 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 RNF114Q9Y508 228 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 SYNGAP1Q96PV0 1343 aa7.01□□□□□ -1.29
HMGB3P13-201ENST00000511263 EIF5BO60841 1220 aaKnown RBP7□□□□□ -1.29
HMGB3P13-201ENST00000511263 NME2P22392 152 aa7□□□□□ -1.29
HMGB3P13-201ENST00000511263 SV2BQ7L1I2 683 aa7□□□□□ -1.29
HMGB3P13-201ENST00000511263 FAM20CQ8IXL6 584 aa7□□□□□ -1.29
HMGB3P13-201ENST00000511263 C12orf50Q8NA57 414 aaPredicted RBP7□□□□□ -1.29
HMGB3P13-201ENST00000511263 SHKBP1Q8TBC3 707 aa7□□□□□ -1.29
HMGB3P13-201ENST00000511263 KRT82Q9NSB4 513 aa7□□□□□ -1.29
HMGB3P13-201ENST00000511263 PREPP48147 710 aa6.99□□□□□ -1.29
HMGB3P13-201ENST00000511263 INTS5Q6P9B9 1019 aaKnown RBP6.99□□□□□ -1.29
HMGB3P13-201ENST00000511263 SULF2Q8IWU5 870 aa6.99□□□□□ -1.29
HMGB3P13-201ENST00000511263 C3orf58Q8NDZ4 430 aa6.99□□□□□ -1.29
HMGB3P13-201ENST00000511263 NECAB3Q96P71 396 aaPredicted RBP6.99□□□□□ -1.29
HMGB3P13-201ENST00000511263 TMPRSS13Q9BYE2 586 aa6.99□□□□□ -1.29
HMGB3P13-201ENST00000511263 VTI1BQ9UEU0 232 aa6.99□□□□□ -1.29
HMGB3P13-201ENST00000511263 GSTP1P09211 210 aaKnown RBP6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 BMP3P12645 472 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 YBX3P16989 372 aaKnown RBP eCLIP6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 ARNTP27540 789 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 GRIK1P39086 918 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 ST13P50502 369 aaKnown RBP6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 USP11P51784 963 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 TPTE2Q6XPS3 522 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 BEND4Q6ZU67 534 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 GIMAP7Q8NHV1 300 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 GIPC2Q8TF65 315 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 CRELD1Q96HD1 420 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 SETDB2Q96T68 719 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 FAM83CQ9BQN1 747 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 CBX8Q9HC52 389 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 CYP8B1Q9UNU6 501 aa6.98□□□□□ -1.29
HMGB3P13-201ENST00000511263 HOXA10P31260 410 aaPredicted RBP6.97□□□□□ -1.29
HMGB3P13-201ENST00000511263 ZNF157P51786 506 aaPredicted RBP6.97□□□□□ -1.29
HMGB3P13-201ENST00000511263 FAAP100Q0VG06 881 aa6.97□□□□□ -1.29
HMGB3P13-201ENST00000511263 TAF1CQ15572 869 aaPredicted RBP6.97□□□□□ -1.29
HMGB3P13-201ENST00000511263 CLEC10AQ8IUN9 316 aa6.97□□□□□ -1.29
HMGB3P13-201ENST00000511263 KCNF1Q9H3M0 494 aa6.97□□□□□ -1.29
HMGB3P13-201ENST00000511263 MYO15BQ96JP2 1530 aa6.96□□□□□ -1.29
HMGB3P13-201ENST00000511263 WNT11O96014 354 aa6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 PWP1Q13610 501 aa6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 CCDC85BQ15834 202 aaPredicted RBP6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 HGSNATQ68CP4 663 aa6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 KCNB2Q92953 911 aa6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 ACSBG1Q96GR2 724 aa6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 TRIM56Q9BRZ2 755 aaKnown RBP6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 NOC4LQ9BVI4 516 aaKnown RBP6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 NRSN2Q9GZP1 204 aa6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 ADGRE2Q9UHX3 823 aa6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 DCAF1Q9Y4B6 1507 aa6.96□□□□□ -1.3
HMGB3P13-201ENST00000511263 WDR64B1ANS9 1081 aa6.95□□□□□ -1.3
HMGB3P13-201ENST00000511263 RPS26P62854 115 aaKnown RBP6.95□□□□□ -1.3
HMGB3P13-201ENST00000511263 SOX4Q06945 474 aaPredicted RBP6.95□□□□□ -1.3
HMGB3P13-201ENST00000511263 LLGL2Q6P1M3 1020 aa6.95□□□□□ -1.3
HMGB3P13-201ENST00000511263 MFSD14AQ96MC6 490 aa6.95□□□□□ -1.3
HMGB3P13-201ENST00000511263 ATXN3LQ9H3M9 355 aa6.95□□□□□ -1.3
HMGB3P13-201ENST00000511263 AOC2O75106 756 aa6.94□□□□□ -1.3
HMGB3P13-201ENST00000511263 TRIM37O94972 964 aa6.94□□□□□ -1.3
HMGB3P13-201ENST00000511263 RXRBP28702 533 aa6.94□□□□□ -1.3
HMGB3P13-201ENST00000511263 AKAP4Q5JQC9 854 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms