RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 ZNF213O14771 459 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 GPAA1O43292 621 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 CSB-PGBD3P0DP91 1061 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 CEBPZQ03701 1054 aaKnown RBP10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 SRRTQ9BXP5 876 aaKnown RBP10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 MROH7-TTC4A0A0A0MT08 1334 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 NRDCO43847 1150 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 SYNE3Q6ZMZ3 975 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 PUS7LQ9H0K6 701 aaKnown RBP10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 ZNF215Q9UL58 517 aaPredicted RBP10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 TCRBV5S4A2TA0A5A2 114 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 WDHD1O75717 1129 aaPredicted RBP10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 ADORA1P30542 326 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 PIP4K2AP48426 406 aaPredicted RBP10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 CBX1P83916 185 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 PDE4CQ08493 712 aa10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 RALYLQ86SE5 291 aaKnown RBP10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 ZNF594Q96JF6 807 aaPredicted RBP10.68□□□□□ -0.7
PDGFRA-208ENST00000509490 ITGB4P16144 1822 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 FAM177BA6PVY3 158 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 A1BGP04217 495 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 SFPQP23246 707 aaKnown RBP eCLIP10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 ZAP70P43403 619 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 TBX2Q13207 712 aaPredicted RBP10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 SF3A1Q15459 793 aaKnown RBP10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 HSP90AB3PQ58FF7 597 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 ZNF579Q8NAF0 562 aaKnown RBP10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 IGDCC4Q8TDY8 1250 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 FANCCQ00597 558 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 MDM2Q00987 491 aaPredicted RBP10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 MYL5Q02045 173 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 SCARF1Q14162 830 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 SHC4Q6S5L8 630 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 VSTM4Q8IW00 320 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 TRIML1Q8N9V2 468 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 GPHNQ9NQX3 736 aaPredicted RBP10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 IFNKQ9P0W0 207 aa10.67□□□□□ -0.7
PDGFRA-208ENST00000509490 SOS2Q07890 1332 aaPredicted RBP10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 DLEC1Q9Y238 1755 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 ATP8B1O43520 1251 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 UQCRFS1P1P0C7P4 283 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 KMT5BQ4FZB7 885 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 CPLX2Q6PUV4 134 aaKnown RBP10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 APOA5Q6Q788 366 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 GIGYF2Q6Y7W6 1299 aaKnown RBP10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 CPLX1O14810 134 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 FGFR2P21802 821 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 SYKP43405 635 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 ETF1P62495 437 aaKnown RBP10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 GUCY1B3Q02153 619 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 IFIT5Q13325 482 aaKnown RBP10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 TAF3Q5VWG9 929 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 TMED8Q6PL24 325 aaPredicted RBP10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 FILIP1Q7Z7B0 1213 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 VPS37DQ86XT2 251 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 WASF1Q92558 559 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 FAM217BQ9NTX9 383 aaPredicted RBP10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 TBC1D2BQ9UPU7 963 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 NUP98P52948 1817 aa10.66□□□□□ -0.7
PDGFRA-208ENST00000509490 BCL9LQ86UU0 1499 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 GOLGA6L9A6NEM1 432 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 IL2RBP14784 551 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 MCAMP43121 646 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 SARSP49591 514 aaKnown RBP10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 ZRSR1Q15695 479 aaKnown RBP10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 KRT40Q6A162 431 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 KRT222Q8N1A0 295 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 SPATA20Q8TB22 786 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 ALG1Q9BT22 464 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 RTL9Q8NET4 1388 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 WNK3Q9BYP7 1800 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 IGSF3O75054 1194 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 FMNL1O95466 1100 aaPredicted RBP10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 IFNAR1P17181 557 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 METAP2P50579 478 aaKnown RBP eCLIP10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 TRDNQ13061 729 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 TRIM65Q6PJ69 517 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 CHST3Q7LGC8 479 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 TBC1D10CQ8IV04 446 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 TMEM139Q8IV31 216 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 LY9Q9HBG7 655 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 MYO5AQ9Y4I1 1855 aaKnown RBP10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 DISP2A7MBM2 1401 aa10.65□□□□□ -0.7
PDGFRA-208ENST00000509490 ZNF18P17022 549 aa10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 FKBP4Q02790 459 aaKnown RBP eCLIP10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 WASHC4Q2M389 1173 aa10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 KRBA2Q6ZNG9 492 aa10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 CYB5R4Q7L1T6 521 aa10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 TMC6Q7Z403 805 aa10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 TTLL11Q8NHH1 800 aa10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 ZBTB3Q9H5J0 574 aa10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 CNNM2Q9H8M5 875 aa10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.65□□□□□ -0.71
PDGFRA-208ENST00000509490 PNPLA7Q6ZV29 1317 aa10.64□□□□□ -0.71
PDGFRA-208ENST00000509490 TPM1P09493 284 aa10.64□□□□□ -0.71
PDGFRA-208ENST00000509490 SLFN14P0C7P3 912 aa10.64□□□□□ -0.71
PDGFRA-208ENST00000509490 PPP2R5BQ15173 497 aa10.64□□□□□ -0.71
PDGFRA-208ENST00000509490 STRBPQ96SI9 672 aaKnown RBP10.64□□□□□ -0.71
PDGFRA-208ENST00000509490 FOXP1Q9H334 677 aaPredicted RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms