RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 MCM7P33993 719 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 MMS22LQ6ZRQ5 1243 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 CCDC84Q86UT8 332 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 YY1AP1Q9H869 796 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 WTAPQ15007 396 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 LIN9Q5TKA1 542 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 TRIM68Q6AZZ1 485 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 RGS22Q8NE09 1264 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 CXorf38Q8TB03 319 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 MORC4Q8TE76 937 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 RABGGTAQ92696 567 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 RUNDC3BQ96NL0 473 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 TSC22D3Q99576 134 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 ESYT1Q9BSJ8 1104 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 ABCF2Q9UG63 623 aa12.51□□□□□ -0.41
LIMCH1-208ENST00000508501 KLF18A0A0U1RQI7 1052 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 SPOPO43791 374 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 LMNAP02545 664 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 HSPA8P11142 646 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 HOXA7P31268 230 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 LIG3P49916 1009 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 NBPF10Q6P3W6 841 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 RSPH3Q86UC2 560 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 CCDC82Q8N4S0 544 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 BBOF1Q8ND07 529 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 BRF1Q92994 677 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 CACYBPQ9HB71 228 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 GNAT3A8MTJ3 354 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 TRIM42Q8IWZ5 723 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 CCDC197Q8NCU1 140 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 TRIM6Q9C030 488 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 ZNF652Q9Y2D9 606 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 WDR46O15213 610 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 KRT15P19012 456 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 PLCD1P51178 756 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 GEN1Q17RS7 908 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 NUTM2GQ5VZR2 741 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 CFAP61Q8NHU2 1237 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 DACT3Q96B18 629 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 RBSNQ9H1K0 784 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 HAUS2Q9NVX0 235 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 MROH2BQ7Z745 1585 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 BTBD11A6QL63 1104 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 MAN1A2O60476 641 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 TRIM37O94972 964 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 PHBP35232 272 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 TBC1D8BQ0IIM8 1120 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 NMIQ13287 307 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 RTN1Q16799 776 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 LRRC43Q8N309 656 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 TRIM58Q8NG06 486 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 ESR2Q92731 530 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 CLSTN2Q9H4D0 955 aa12.5□□□□□ -0.41
LIMCH1-208ENST00000508501 ARHGAP42A6NI28 874 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 CHUKO15111 745 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 TCP1P17987 556 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 ST13P4Q8IZP2 240 aaPredicted RBP12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 SH3GL3Q99963 347 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 TYW1Q9NV66 732 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 KIAA1107Q9UPP5 1409 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 BAG3O95817 575 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 IFIT5Q13325 482 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 TRIM60Q495X7 471 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 MICU3Q86XE3 530 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 RTL9Q8NET4 1388 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 ARHGEF9O43307 516 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 PCYT1AP49585 367 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 NOP14P78316 857 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 RPS6KA1Q15418 735 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 STK38LQ9Y2H1 464 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 SAR1BQ9Y6B6 198 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 E9PMD0 336 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 TTC4O95801 387 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 PODNQ7Z5L7 613 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 NME8Q8N427 588 aa12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 RBM42Q9BTD8 480 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 ZBTB12Q9Y330 459 aaPredicted RBP12.49□□□□□ -0.41
LIMCH1-208ENST00000508501 PALM3A6NDB9 673 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 STARD3NLO95772 234 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 TNFAIP3P21580 790 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 MRFAP1L1Q96HT8 127 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 RILPQ96NA2 401 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 EPS15L1Q9UBC2 864 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 ANGPTL2Q9UKU9 493 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 BAG5Q9UL15 447 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 ATF3P18847 181 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 FANCCQ00597 558 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 ZNF449Q6P9G9 518 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 POLE3Q9NRF9 147 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 SMARCA5O60264 1052 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 APOEP02649 317 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 MAGEA9P43362 315 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 RBM5P52756 815 aaKnown RBP eCLIP12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 ABTB2Q8N961 1025 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 LLPHQ9BRT6 129 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 KIFC3Q9BVG8 833 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 C6orf50Q9HD87 102 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 CLTAP09496 248 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 MAGEA1P43355 309 aa12.48□□□□□ -0.41
LIMCH1-208ENST00000508501 GRK7Q8WTQ7 553 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms