RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 RASGRF1Q13972 1273 aa16.11■□□□□ 0.17
TCOF1-209ENST00000506630 HSP90AB4PQ58FF6 505 aa16.11■□□□□ 0.17
TCOF1-209ENST00000506630 OTOP1Q7RTM1 612 aa16.11■□□□□ 0.17
TCOF1-209ENST00000506630 IFNL1Q8IU54 200 aa16.11■□□□□ 0.17
TCOF1-209ENST00000506630 MTMR14Q8NCE2 650 aa16.11■□□□□ 0.17
TCOF1-209ENST00000506630 CRBNQ96SW2 442 aa16.11■□□□□ 0.17
TCOF1-209ENST00000506630 DEFB129Q9H1M3 183 aa16.11■□□□□ 0.17
TCOF1-209ENST00000506630 SERPINA10Q9UK55 444 aa16.11■□□□□ 0.17
TCOF1-209ENST00000506630 MAST3O60307 1309 aa16.11■□□□□ 0.17
TCOF1-209ENST00000506630 CLRN2A0PK11 232 aa16.1■□□□□ 0.17
TCOF1-209ENST00000506630 SPDYE2BA6NHP3 402 aa16.1■□□□□ 0.17
TCOF1-209ENST00000506630 MYO1BO43795 1136 aa16.1■□□□□ 0.17
TCOF1-209ENST00000506630 SPDYE6P0CI01 402 aa16.1■□□□□ 0.17
TCOF1-209ENST00000506630 CRKP46108 304 aa16.1■□□□□ 0.17
TCOF1-209ENST00000506630 HABP4Q5JVS0 413 aaKnown RBP16.1■□□□□ 0.17
TCOF1-209ENST00000506630 OTUD7BQ6GQQ9 843 aa16.1■□□□□ 0.17
TCOF1-209ENST00000506630 ERO1AQ96HE7 468 aa16.1■□□□□ 0.17
TCOF1-209ENST00000506630 DBNDD2Q9BQY9 259 aa16.1■□□□□ 0.17
TCOF1-209ENST00000506630 SUGT1Q9Y2Z0 365 aa16.1■□□□□ 0.17
TCOF1-209ENST00000506630 SSC5DA1L4H1 1573 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 UNCXA6NJT0 531 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 ARID4AP29374 1257 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-209ENST00000506630 PRDX5P30044 214 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 MAP3K11Q16584 847 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 SUPT20HL1Q3ZLR7 823 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 TTC39AQ5SRH9 613 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 RHPN1Q8TCX5 695 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 TEKT1Q969V4 418 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 CCDC8Q9H0W5 538 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-209ENST00000506630 VEZTQ9HBM0 779 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 PPP2R3BQ9Y5P8 575 aa16.09■□□□□ 0.17
TCOF1-209ENST00000506630 DOCK2Q92608 1830 aa16.08■□□□□ 0.17
TCOF1-209ENST00000506630 ZBTB22O15209 634 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 LDHBP07195 334 aaKnown RBP16.08■□□□□ 0.16
TCOF1-209ENST00000506630 UQCRFS1P1P0C7P4 283 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 CCDC158Q5M9N0 1113 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 CDAN1Q8IWY9 1227 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 ZGPATQ8N5A5 531 aaKnown RBP16.08■□□□□ 0.16
TCOF1-209ENST00000506630 EAF2Q96CJ1 260 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-209ENST00000506630 KIF1BPQ96EK5 621 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 WNK4Q96J92 1243 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 BCL11AQ9H165 835 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 IL1RAPL2Q9NP60 686 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 TLR7Q9NYK1 1049 aaKnown RBP16.08■□□□□ 0.16
TCOF1-209ENST00000506630 ABCF2Q9UG63 623 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 PDS5AQ29RF7 1337 aaKnown RBP16.08■□□□□ 0.16
TCOF1-209ENST00000506630 SALL1Q9NSC2 1324 aa16.08■□□□□ 0.16
TCOF1-209ENST00000506630 POTEFA5A3E0 1075 aa16.07■□□□□ 0.16
TCOF1-209ENST00000506630 IGF2BP3O00425 579 aaKnown RBP eCLIP16.07■□□□□ 0.16
TCOF1-209ENST00000506630 HDLBPQ00341 1268 aaKnown RBP16.07■□□□□ 0.16
TCOF1-209ENST00000506630 AACSQ86V21 672 aa16.07■□□□□ 0.16
TCOF1-209ENST00000506630 SPATA5Q8NB90 893 aa16.07■□□□□ 0.16
TCOF1-209ENST00000506630 CLMNQ96JQ2 1002 aa16.07■□□□□ 0.16
TCOF1-209ENST00000506630 HMG20BQ9P0W2 317 aa16.07■□□□□ 0.16
TCOF1-209ENST00000506630 DBNLQ9UJU6 430 aaKnown RBP16.07■□□□□ 0.16
TCOF1-209ENST00000506630 PTPN22Q9Y2R2 807 aa16.07■□□□□ 0.16
TCOF1-209ENST00000506630 MYH7P12883 1935 aa16.06■□□□□ 0.16
TCOF1-209ENST00000506630 RAB11FIP3O75154 756 aa16.06■□□□□ 0.16
TCOF1-209ENST00000506630 MCAMP43121 646 aa16.06■□□□□ 0.16
TCOF1-209ENST00000506630 IREB2P48200 963 aaKnown RBP16.06■□□□□ 0.16
TCOF1-209ENST00000506630 PI16Q6UXB8 463 aa16.06■□□□□ 0.16
TCOF1-209ENST00000506630 CLASRPQ8N2M8 674 aaKnown RBP16.06■□□□□ 0.16
TCOF1-209ENST00000506630 TDRD3Q9H7E2 651 aaKnown RBP16.06■□□□□ 0.16
TCOF1-209ENST00000506630 EFCC1Q9HA90 598 aa16.06■□□□□ 0.16
TCOF1-209ENST00000506630 CDK5RAP2Q96SN8 1893 aa16.05■□□□□ 0.16
TCOF1-209ENST00000506630 DIXDC1Q155Q3 683 aa16.05■□□□□ 0.16
TCOF1-209ENST00000506630 SPDYE2Q495Y8 402 aa16.05■□□□□ 0.16
TCOF1-209ENST00000506630 NBPF12Q5TAG4 269 aaPredicted RBP16.05■□□□□ 0.16
TCOF1-209ENST00000506630 DZIP1Q86YF9 867 aaKnown RBP16.05■□□□□ 0.16
TCOF1-209ENST00000506630 CD99L2Q8TCZ2 262 aa16.05■□□□□ 0.16
TCOF1-209ENST00000506630 ZDHHC15Q96MV8 337 aa16.05■□□□□ 0.16
TCOF1-209ENST00000506630 ZNF70Q9UC06 446 aaPredicted RBP16.05■□□□□ 0.16
TCOF1-209ENST00000506630 SUPT16HQ9Y5B9 1047 aaKnown RBP16.05■□□□□ 0.16
TCOF1-209ENST00000506630 OTOFQ9HC10 1997 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 SP3Q02447 781 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 CRHR2Q13324 411 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 ARHGEF6Q15052 776 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 SPTY2D1Q68D10 685 aaPredicted RBP16.04■□□□□ 0.16
TCOF1-209ENST00000506630 HHIPL2Q6UWX4 724 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 ERICH6Q7L0X2 663 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 ANKRD13AQ8IZ07 590 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 ARMC5Q96C12 935 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 TMEM106CQ9BVX2 250 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 MRIQ9BWK5 157 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 SNRKQ9NRH2 765 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 PCDHB15Q9Y5E8 787 aa16.04■□□□□ 0.16
TCOF1-209ENST00000506630 IFIT2P09913 472 aaKnown RBP16.03■□□□□ 0.16
TCOF1-209ENST00000506630 TNFAIP1Q13829 316 aa16.03■□□□□ 0.16
TCOF1-209ENST00000506630 TBC1D9Q6ZT07 1266 aa16.03■□□□□ 0.16
TCOF1-209ENST00000506630 TMOD2Q9NZR1 351 aa16.03■□□□□ 0.16
TCOF1-209ENST00000506630 DAGLAQ9Y4D2 1042 aa16.03■□□□□ 0.16
TCOF1-209ENST00000506630 TCP10L2B9ZVM9 353 aa16.02■□□□□ 0.16
TCOF1-209ENST00000506630 EN2P19622 333 aaPredicted RBP16.02■□□□□ 0.16
TCOF1-209ENST00000506630 CACNB3P54284 484 aa16.02■□□□□ 0.16
TCOF1-209ENST00000506630 RASA3Q14644 834 aa16.02■□□□□ 0.16
TCOF1-209ENST00000506630 APOBEC3HQ6NTF7 200 aaKnown RBP16.02■□□□□ 0.16
TCOF1-209ENST00000506630 ZNF512BQ96KM6 892 aaPredicted RBP16.02■□□□□ 0.16
TCOF1-209ENST00000506630 LRRCC1Q9C099 1032 aa16.02■□□□□ 0.16
TCOF1-209ENST00000506630 RNF216Q9NWF9 866 aaPredicted RBP16.02■□□□□ 0.16
TCOF1-209ENST00000506630 RAI14Q9P0K7 980 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms