RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 PSMD7P51665 324 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 PDAP1Q13442 181 aaKnown RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 RCN2Q14257 317 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 ANKRD20A4Q4UJ75 823 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 ANKRD20A8PQ5CZ79 823 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 ANKRD20A2Q5SQ80 823 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 ANKRD20A1Q5TYW2 823 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 API5Q9BZZ5 524 aaKnown RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 EEA1Q15075 1411 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 BIN1O00499 593 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 CAPRIN1Q14444 709 aaKnown RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 ZNF568Q3ZCX4 644 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 DTX3LQ8TDB6 740 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 HOOK2Q96ED9 719 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 TRIM4Q9C037 500 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 APBB1O00213 710 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 EXOC5O00471 708 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 HIP1RO75146 1068 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 GSDMDP57764 484 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 MCTP2Q6DN12 878 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 IQCDQ96DY2 449 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 DTNBP1Q96EV8 351 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 POLR3CQ9BUI4 534 aaPredicted RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 TRIM31Q9BZY9 425 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 STK24Q9Y6E0 443 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 M0R3G1 203 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 PRMT3O60678 531 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 KRT85P78386 507 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 PRPF18Q99633 342 aaKnown RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 ATF4P18848 351 aaPredicted RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 CYP2C19P33261 490 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 CARSP49589 748 aaKnown RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 SMTNP53814 917 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 NFKBIBQ15653 356 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 WASHC4Q2M389 1173 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 KRT77Q7Z794 578 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 ZNF579Q8NAF0 562 aaKnown RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 ING3Q9NXR8 418 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 ZNF215Q9UL58 517 aaPredicted RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 TYW5A2RUC4 315 aaKnown RBP6.5□□□□□ -1.37
USF3-204ENST00000496826 POTEFA5A3E0 1075 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 MYL1P05976 194 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 ARL4CP56559 192 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 STX1BP61266 288 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 LRRC8BQ6P9F7 803 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 CYP26C1Q6V0L0 522 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 ERN1O75460 977 aaKnown RBP6.5□□□□□ -1.37
USF3-204ENST00000496826 RETREG2Q8NC44 543 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 PKD2L2Q9NZM6 624 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 SMCO3A2RU48 225 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 CCDC93Q567U6 631 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 AKNAD1Q5T1N1 836 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 LRGUKQ96M69 825 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 NR1I2O75469 434 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 SMARCA1P28370 1054 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 SESN2P58004 480 aaPredicted RBP6.5□□□□□ -1.37
USF3-204ENST00000496826 MICALL2Q8IY33 904 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 ABTB1Q969K4 478 aaPredicted RBP6.5□□□□□ -1.37
USF3-204ENST00000496826 SLC12A2P55011 1212 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 KRT80Q6KB66 452 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 TADA2BQ86TJ2 420 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 MFN1Q8IWA4 741 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 G3BP2Q9UN86 482 aaKnown RBP6.5□□□□□ -1.37
USF3-204ENST00000496826 POTECB2RU33 542 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 ARID5AQ03989 594 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 MAP3K12Q12852 859 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 MRPL28Q13084 256 aaKnown RBP6.5□□□□□ -1.37
USF3-204ENST00000496826 CEP85LQ5SZL2 805 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 NOX5Q96PH1 765 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 ANO10Q9NW15 660 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 SLC8A2Q9UPR5 921 aa6.5□□□□□ -1.37
USF3-204ENST00000496826 GOLGA8AA7E2F4 631 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 MAP3K13O43283 966 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 TSTA3Q13630 321 aaPredicted RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 BMP2KLQ5H9B9 411 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 EFCAB2Q5VUJ9 269 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 HDDC2Q7Z4H3 204 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 NGDNQ8NEJ9 315 aaKnown RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 ARHGEF1Q92888 912 aaKnown RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 TEKT1Q969V4 418 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 BIN2Q9UBW5 565 aaPredicted RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 SYNPO2Q9UMS6 1093 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 TMEM232C9JQI7 657 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 GOLGA8SH3BPF8 625 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 RASSF9O75901 435 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 SPZ1Q9BXG8 430 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 RAB17Q9H0T7 212 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 SAMSN1Q9NSI8 373 aaKnown RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 MAP10Q9P2G4 905 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 HSD3B2P26439 372 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 PCK1P35558 622 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 NPY2RP49146 381 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 BCAP31P51572 246 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 DPYDQ12882 1025 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 SNW1Q13573 536 aaKnown RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 CXorf38Q8TB03 319 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 PPP4R1Q8TF05 950 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 DDI1Q8WTU0 396 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 TINF2Q9BSI4 451 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 DNAJC17Q9NVM6 304 aaKnown RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms