RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 BTDP43251 543 aa17.77■□□□□ 0.44
LIMS1-213ENST00000496653 RASA3Q14644 834 aa17.77■□□□□ 0.44
LIMS1-213ENST00000496653 ZSCAN25Q6NSZ9 544 aa17.77■□□□□ 0.44
LIMS1-213ENST00000496653 PCDHAC2Q9Y5I4 1007 aa17.77■□□□□ 0.44
LIMS1-213ENST00000496653 TLL2Q9Y6L7 1015 aa17.77■□□□□ 0.44
LIMS1-213ENST00000496653 GOLIM4O00461 696 aa17.76■□□□□ 0.43
LIMS1-213ENST00000496653 PPP1R12BO60237 982 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-213ENST00000496653 CDC42EP5Q6NZY7 148 aa17.76■□□□□ 0.43
LIMS1-213ENST00000496653 ARMC9Q7Z3E5 817 aa17.76■□□□□ 0.43
LIMS1-213ENST00000496653 BOLA2Q9H3K6 86 aa17.76■□□□□ 0.43
LIMS1-213ENST00000496653 PIH1D3Q9NQM4 214 aaKnown RBP17.76■□□□□ 0.43
LIMS1-213ENST00000496653 USP40Q9NVE5 1235 aa17.76■□□□□ 0.43
LIMS1-213ENST00000496653 RASSF10A6NK89 507 aa17.75■□□□□ 0.43
LIMS1-213ENST00000496653 TCP10L2B9ZVM9 353 aa17.75■□□□□ 0.43
LIMS1-213ENST00000496653 ECE1P42892 770 aa17.75■□□□□ 0.43
LIMS1-213ENST00000496653 CST9Q5W186 159 aa17.75■□□□□ 0.43
LIMS1-213ENST00000496653 CHD1LQ86WJ1 897 aa17.75■□□□□ 0.43
LIMS1-213ENST00000496653 IDI2Q9BXS1 227 aa17.75■□□□□ 0.43
LIMS1-213ENST00000496653 MAST2Q6P0Q8 1798 aa17.75■□□□□ 0.43
LIMS1-213ENST00000496653 CNTNAP1P78357 1384 aa17.75■□□□□ 0.43
LIMS1-213ENST00000496653 AOX1Q06278 1338 aa17.74■□□□□ 0.43
LIMS1-213ENST00000496653 UNCXA6NJT0 531 aa17.74■□□□□ 0.43
LIMS1-213ENST00000496653 ENTPD3O75355 529 aa17.74■□□□□ 0.43
LIMS1-213ENST00000496653 NPM3O75607 178 aaKnown RBP17.74■□□□□ 0.43
LIMS1-213ENST00000496653 CYP7A1P22680 504 aa17.74■□□□□ 0.43
LIMS1-213ENST00000496653 NUCB1Q02818 461 aa17.74■□□□□ 0.43
LIMS1-213ENST00000496653 SAPCD2Q86UD0 394 aa17.74■□□□□ 0.43
LIMS1-213ENST00000496653 PAPPA2Q9BXP8 1791 aa17.74■□□□□ 0.43
LIMS1-213ENST00000496653 IGHDP01880 384 aa17.73■□□□□ 0.43
LIMS1-213ENST00000496653 PPP4CP60510 307 aa17.73■□□□□ 0.43
LIMS1-213ENST00000496653 TTLL12Q14166 644 aaPredicted RBP17.73■□□□□ 0.43
LIMS1-213ENST00000496653 DCAF15Q66K64 600 aa17.73■□□□□ 0.43
LIMS1-213ENST00000496653 MAGEB6Q8N7X4 407 aa17.73■□□□□ 0.43
LIMS1-213ENST00000496653 FAM151AQ8WW52 585 aa17.73■□□□□ 0.43
LIMS1-213ENST00000496653 ECM29Q5VYK3 1845 aa17.72■□□□□ 0.43
LIMS1-213ENST00000496653 HUNKP57058 714 aa17.72■□□□□ 0.43
LIMS1-213ENST00000496653 DEFB115Q30KQ5 88 aa17.72■□□□□ 0.43
LIMS1-213ENST00000496653 SLC9C2Q5TAH2 1124 aa17.72■□□□□ 0.43
LIMS1-213ENST00000496653 ZNF384Q8TF68 577 aa17.72■□□□□ 0.43
LIMS1-213ENST00000496653 KLRG1Q96E93 195 aa17.72■□□□□ 0.43
LIMS1-213ENST00000496653 LNPKQ9C0E8 428 aa17.72■□□□□ 0.43
LIMS1-213ENST00000496653 ANTXR1Q9H6X2 564 aa17.72■□□□□ 0.43
LIMS1-213ENST00000496653 STAP2Q9UGK3 403 aa17.72■□□□□ 0.43
LIMS1-213ENST00000496653 COL2A1P02458 1487 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-213ENST00000496653 RFX7Q2KHR2 1363 aa17.71■□□□□ 0.43
LIMS1-213ENST00000496653 ZFYP08048 801 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-213ENST00000496653 PDE6AP16499 860 aa17.71■□□□□ 0.43
LIMS1-213ENST00000496653 IREB2P48200 963 aaKnown RBP17.71■□□□□ 0.43
LIMS1-213ENST00000496653 FMR1Q06787 632 aaKnown RBP eCLIP17.71■□□□□ 0.43
LIMS1-213ENST00000496653 TICAM2Q86XR7 235 aa17.71■□□□□ 0.43
LIMS1-213ENST00000496653 TEX11Q8IYF3 940 aa17.71■□□□□ 0.43
LIMS1-213ENST00000496653 TMEM39BQ9GZU3 492 aa17.71■□□□□ 0.43
LIMS1-213ENST00000496653 NDUFB9Q9Y6M9 179 aa17.71■□□□□ 0.43
LIMS1-213ENST00000496653 SALL3Q9BXA9 1300 aa17.71■□□□□ 0.42
LIMS1-213ENST00000496653 CACNB3P54284 484 aa17.7■□□□□ 0.42
LIMS1-213ENST00000496653 PDE1AP54750 535 aa17.7■□□□□ 0.42
LIMS1-213ENST00000496653 RHBDL3P58872 404 aa17.7■□□□□ 0.42
LIMS1-213ENST00000496653 UBE3CQ15386 1083 aa17.7■□□□□ 0.42
LIMS1-213ENST00000496653 B4GALNT3Q6L9W6 998 aa17.7■□□□□ 0.42
LIMS1-213ENST00000496653 PAXIP1Q6ZW49 1069 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-213ENST00000496653 KBTBD3Q8NAB2 608 aa17.7■□□□□ 0.42
LIMS1-213ENST00000496653 PI4K2BQ8TCG2 481 aa17.7■□□□□ 0.42
LIMS1-213ENST00000496653 CCDC102AQ96A19 550 aa17.7■□□□□ 0.42
LIMS1-213ENST00000496653 AATFQ9NY61 560 aaKnown RBP eCLIP17.7■□□□□ 0.42
LIMS1-213ENST00000496653 SCAF8Q9UPN6 1271 aaKnown RBP17.7■□□□□ 0.42
LIMS1-213ENST00000496653 AKAP11Q9UKA4 1901 aa17.7■□□□□ 0.42
LIMS1-213ENST00000496653 TRPM7Q96QT4 1865 aa17.69■□□□□ 0.42
LIMS1-213ENST00000496653 WDHD1O75717 1129 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-213ENST00000496653 RGS3P49796 1198 aa17.69■□□□□ 0.42
LIMS1-213ENST00000496653 MAP3K11Q16584 847 aa17.69■□□□□ 0.42
LIMS1-213ENST00000496653 ZSCAN29Q8IWY8 852 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-213ENST00000496653 TEPSINQ96N21 525 aa17.69■□□□□ 0.42
LIMS1-213ENST00000496653 MKRN1Q9UHC7 482 aaKnown RBP17.69■□□□□ 0.42
LIMS1-213ENST00000496653 MAGEB6P1A0A0J9YX57 407 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 ADD2P35612 726 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 HTRA3P83110 453 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 TCP10Q12799 353 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 NFIAQ12857 509 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 NBPF12Q5TAG4 269 aaPredicted RBP17.68■□□□□ 0.42
LIMS1-213ENST00000496653 PRAMEF18Q5VWM3 479 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 ERICH6BQ5W0A0 696 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 TSHZ3Q63HK5 1081 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 RGMBQ6NW40 437 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 CENPQQ7L2Z9 268 aaPredicted RBP17.68■□□□□ 0.42
LIMS1-213ENST00000496653 CRNKL1Q9BZJ0 848 aaKnown RBP17.68■□□□□ 0.42
LIMS1-213ENST00000496653 DHX36Q9H2U1 1008 aaKnown RBP17.68■□□□□ 0.42
LIMS1-213ENST00000496653 FAM198AQ9UFP1 575 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 ANGEL1Q9UNK9 670 aaKnown RBP17.68■□□□□ 0.42
LIMS1-213ENST00000496653 ZNF532Q9HCE3 1301 aa17.68■□□□□ 0.42
LIMS1-213ENST00000496653 ATRNL1Q5VV63 1379 aa17.67■□□□□ 0.42
LIMS1-213ENST00000496653 NOGQ13253 232 aa17.67■□□□□ 0.42
LIMS1-213ENST00000496653 PICALMQ13492 652 aa17.67■□□□□ 0.42
LIMS1-213ENST00000496653 DLK2Q6UY11 383 aa17.67■□□□□ 0.42
LIMS1-213ENST00000496653 OTUD7AQ8TE49 926 aaPredicted RBP17.67■□□□□ 0.42
LIMS1-213ENST00000496653 EVI5LQ96CN4 794 aa17.67■□□□□ 0.42
LIMS1-213ENST00000496653 EDC3Q96F86 508 aaKnown RBP17.67■□□□□ 0.42
LIMS1-213ENST00000496653 DDRGK1Q96HY6 314 aa17.67■□□□□ 0.42
LIMS1-213ENST00000496653 CAPNS2Q96L46 248 aa17.67■□□□□ 0.42
LIMS1-213ENST00000496653 CSRNP1Q96S65 589 aa17.67■□□□□ 0.42
LIMS1-213ENST00000496653 OSBPL3Q9H4L5 887 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms