RNA–Protein interactions for RNA: ENST00000496549.5

CRNKL1-205, Transcript of crooked neck pre-mRNA splicing factor 1, human

TSL 1 (best)

Gene CRNKL1, Length 4,093 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CRNKL1-205	ENST00000496549	UBXN6	Q9BZV1	441 aa		9.21	□□□□□ -0.93
CRNKL1-205	ENST00000496549	JADE2	Q9NQC1	790 aa		9.21	□□□□□ -0.93
CRNKL1-205	ENST00000496549	LUC7L2	Q9Y383	392 aa	Known RBP	9.21	□□□□□ -0.93
CRNKL1-205	ENST00000496549	PZP	P20742	1482 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	APBA1	Q02410	837 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	PDCL	Q13371	301 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	TSHZ3	Q63HK5	1081 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SPATA21	Q7Z572	469 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	NSMCE1	Q8WV22	266 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	P3H4	Q92791	437 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	NAA15	Q9BXJ9	866 aa	Known RBP	9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	PPAN	Q9NQ55	473 aa	Known RBP	9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	NLRP5	P59047	1200 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CCDC13	Q8IYE1	715 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	AFAP1	Q8N556	730 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	FAM81A	Q8TBF8	368 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	COG1	Q8WTW3	980 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	PPP1R12C	Q9BZL4	782 aa		9.21	□□□□□ -0.94
CRNKL1-205	ENST00000496549	HIP1R	O75146	1068 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	MAGEA8	P43361	318 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CCT4	P50991	539 aa	Known RBP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	KRT32	Q14532	448 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	TAF11	Q15544	211 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	ZC3H12A	Q5D1E8	599 aa	Known RBP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	APLF	Q8IW19	511 aa	Predicted RBP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CAPZA3	Q96KX2	299 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	RMDN2	Q96LZ7	410 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	DESI2	Q9BSY9	194 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SAMD15	Q9P1V8	674 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	PAIP2B	Q9ULR5	123 aa	Known RBP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	TRPC6	Q9Y210	931 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CPLX1	O14810	134 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	HPD	P32754	393 aa	Predicted RBP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	NLRP12	P59046	1061 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	MTX1	Q13505	466 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CCDC96	Q2M329	555 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	KCNV1	Q6PIU1	500 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	MRPL50	Q8N5N7	158 aa	Known RBP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	DRAXIN	Q8NBI3	349 aa	Predicted RBP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	EZH1	Q92800	747 aa	Predicted RBP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	GBP5	Q96PP8	586 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SNX14	Q9Y5W7	946 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	USP5	P45974	858 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	HNRNPM	P52272	730 aa	Known RBP eCLIP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	ROR2	Q01974	943 aa	Known RBP	9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	GRIK3	Q13003	919 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	BRF1	Q92994	677 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	WDR24	Q96S15	920 aa		9.2	□□□□□ -0.94
CRNKL1-205	ENST00000496549	ERICH2	A1L162	156 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CETN3	O15182	167 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	YEATS4	O95619	227 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	IFIT2	P09913	472 aa	Known RBP	9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	GNAT1	P11488	350 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CCT2	P78371	535 aa	Known RBP	9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SFSWAP	Q12872	951 aa	Known RBP	9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	BICD1	Q96G01	975 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	PCMTD1	Q96MG8	357 aa	Predicted RBP	9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	BIN2	Q9UBW5	565 aa	Predicted RBP	9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	KDM6B	O15054	1643 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	NSD3	Q9BZ95	1437 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	INF2	Q27J81	1249 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	TSGA10IP	Q3SY00	556 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CEP85	Q6P2H3	762 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	LARP1	Q6PKG0	1096 aa	Known RBP	9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	MSANTD4	Q8NCY6	345 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	DDX54	Q8TDD1	881 aa	Known RBP	9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	KCNG4	Q8TDN1	519 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SPG7	Q9UQ90	795 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CDHR2	Q9BYE9	1310 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SURF6	O75683	361 aa	Known RBP	9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	MAP7	Q14244	749 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CCDC6	Q16204	474 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	RUFY3	Q7L099	469 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	KIAA0825	Q8IV33	1275 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	CNGA4	Q8IV77	575 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	NUP88	Q99567	741 aa	Predicted RBP	9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SUGCT	Q9HAC7	445 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	PRDM16	Q9HAZ2	1276 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	KIAA1468	Q9P260	1216 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	TTC21B	Q7Z4L5	1316 aa		9.19	□□□□□ -0.94
CRNKL1-205	ENST00000496549	STXBP3	O00186	592 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SNX1	Q13596	522 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	THEMIS2	Q5TEJ8	643 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	ZMAT2	Q96NC0	199 aa	Known RBP	9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	PUS7	Q96PZ0	661 aa	Known RBP	9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	OSBPL1A	Q9BXW6	950 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	MYO1A	Q9UBC5	1043 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	FAM184B	Q9ULE4	1060 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	GUCA1B	Q9UMX6	200 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	MATR3	P43243	847 aa	Known RBP eCLIP	9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	MYSM1	Q5VVJ2	828 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	TSGA10	Q9BZW7	698 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	HAUS2	Q9NVX0	235 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	RAB21	Q9UL25	225 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	ATXN2	Q99700	1313 aa	Known RBP	9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	ZNF202	O95125	648 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SESN3	P58005	492 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	SEPT2	Q15019	361 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	ARMC3	Q5W041	872 aa		9.18	□□□□□ -0.94
CRNKL1-205	ENST00000496549	ALS2CL	Q60I27	953 aa		9.18	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 19 ms