RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 SCHIP1Q9P0W5 487 aaPredicted RBP10.68□□□□□ -0.7
RIF1-211ENST00000494333 NARFQ9UHQ1 456 aa10.68□□□□□ -0.7
RIF1-211ENST00000494333 USP3Q9Y6I4 520 aa10.68□□□□□ -0.7
RIF1-211ENST00000494333 KCPQ6ZWJ8 1503 aa10.68□□□□□ -0.7
RIF1-211ENST00000494333 TM4SF1P30408 202 aa10.67□□□□□ -0.7
RIF1-211ENST00000494333 DDR1Q08345 913 aa10.67□□□□□ -0.7
RIF1-211ENST00000494333 TMEM164Q5U3C3 297 aa10.67□□□□□ -0.7
RIF1-211ENST00000494333 TMEM214Q6NUQ4 689 aaKnown RBP10.67□□□□□ -0.7
RIF1-211ENST00000494333 PLEKHF1Q96S99 279 aa10.67□□□□□ -0.7
RIF1-211ENST00000494333 PNNQ9H307 717 aaKnown RBP10.67□□□□□ -0.7
RIF1-211ENST00000494333 MYH14Q7Z406 1995 aaKnown RBP10.66□□□□□ -0.7
RIF1-211ENST00000494333 CDK2AP1O14519 115 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 LGR5O75473 907 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 A1BGP04217 495 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 DPEP1P16444 411 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 EIF5P55010 431 aaKnown RBP10.66□□□□□ -0.7
RIF1-211ENST00000494333 FOXK2Q01167 660 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 POU4F2Q12837 409 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 TAF7Q15545 349 aaPredicted RBP10.66□□□□□ -0.7
RIF1-211ENST00000494333 NPM2Q86SE8 214 aaKnown RBP10.66□□□□□ -0.7
RIF1-211ENST00000494333 HINFPQ9BQA5 517 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 MIS18AQ9NYP9 233 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 IQSEC3Q9UPP2 1182 aaPredicted RBP10.66□□□□□ -0.7
RIF1-211ENST00000494333 BCS1LQ9Y276 419 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 USP16Q9Y5T5 823 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 COL5A3P25940 1745 aaPredicted RBP10.66□□□□□ -0.7
RIF1-211ENST00000494333 ADAMTS7Q9UKP4 1686 aa10.66□□□□□ -0.7
RIF1-211ENST00000494333 COL15A1P39059 1388 aa10.65□□□□□ -0.7
RIF1-211ENST00000494333 A0A087WZG4 1122 aa10.65□□□□□ -0.7
RIF1-211ENST00000494333 PRAMEF22A3QJZ6 481 aa10.65□□□□□ -0.7
RIF1-211ENST00000494333 SPATA31C2B4DYI2 1134 aa10.65□□□□□ -0.7
RIF1-211ENST00000494333 POLRMTO00411 1230 aaKnown RBP10.65□□□□□ -0.7
RIF1-211ENST00000494333 SNRPA1P09661 255 aaKnown RBP10.65□□□□□ -0.7
RIF1-211ENST00000494333 RHOQP17081 205 aa10.65□□□□□ -0.7
RIF1-211ENST00000494333 GTF2E1P29083 439 aaPredicted RBP10.65□□□□□ -0.7
RIF1-211ENST00000494333 NFIXQ14938 502 aa10.65□□□□□ -0.7
RIF1-211ENST00000494333 BICDL1Q6ZP65 573 aa10.65□□□□□ -0.7
RIF1-211ENST00000494333 UTRNP46939 3433 aa10.65□□□□□ -0.71
RIF1-211ENST00000494333 TJP1Q07157 1748 aa10.64□□□□□ -0.71
RIF1-211ENST00000494333 MAPK8IP3Q9UPT6 1336 aa10.64□□□□□ -0.71
RIF1-211ENST00000494333 SERPINB2P05120 415 aa10.64□□□□□ -0.71
RIF1-211ENST00000494333 KCNA3P22001 575 aa10.64□□□□□ -0.71
RIF1-211ENST00000494333 IL6STP40189 918 aaPredicted RBP10.64□□□□□ -0.71
RIF1-211ENST00000494333 NFE2L2Q16236 605 aa10.64□□□□□ -0.71
RIF1-211ENST00000494333 TBCELQ5QJ74 424 aa10.64□□□□□ -0.71
RIF1-211ENST00000494333 NBPF10Q6P3W6 841 aaKnown RBP10.64□□□□□ -0.71
RIF1-211ENST00000494333 NBPF15Q8N660 670 aa10.64□□□□□ -0.71
RIF1-211ENST00000494333 RHBDD1Q8TEB9 315 aa10.64□□□□□ -0.71
RIF1-211ENST00000494333 TSPAN10Q9H1Z9 355 aaPredicted RBP10.64□□□□□ -0.71
RIF1-211ENST00000494333 CICQ96RK0 1608 aaPredicted RBP10.64□□□□□ -0.71
RIF1-211ENST00000494333 PXDNLA1KZ92 1463 aa10.63□□□□□ -0.71
RIF1-211ENST00000494333 PIP4K2AP48426 406 aaPredicted RBP10.63□□□□□ -0.71
RIF1-211ENST00000494333 GNASQ5JWF2 1037 aa10.63□□□□□ -0.71
RIF1-211ENST00000494333 TAS1R3Q7RTX0 852 aa10.63□□□□□ -0.71
RIF1-211ENST00000494333 SLC9A9Q8IVB4 645 aa10.63□□□□□ -0.71
RIF1-211ENST00000494333 ZNF295-AS1Q8N0V1 137 aa10.63□□□□□ -0.71
RIF1-211ENST00000494333 THUMPD2Q9BTF0 503 aaKnown RBP10.63□□□□□ -0.71
RIF1-211ENST00000494333 PIM2Q9P1W9 311 aa10.63□□□□□ -0.71
RIF1-211ENST00000494333 C10orf71Q711Q0 1435 aa10.63□□□□□ -0.71
RIF1-211ENST00000494333 MYBBP1AQ9BQG0 1328 aaKnown RBP10.62□□□□□ -0.71
RIF1-211ENST00000494333 CHRNA5P30532 468 aa10.62□□□□□ -0.71
RIF1-211ENST00000494333 RIPK4P57078 832 aa10.62□□□□□ -0.71
RIF1-211ENST00000494333 SWI5Q1ZZU3 235 aa10.62□□□□□ -0.71
RIF1-211ENST00000494333 C4orf17Q53FE4 359 aa10.62□□□□□ -0.71
RIF1-211ENST00000494333 TBC1D9BQ66K14 1250 aa10.62□□□□□ -0.71
RIF1-211ENST00000494333 ARHGAP27Q6ZUM4 889 aa10.62□□□□□ -0.71
RIF1-211ENST00000494333 PNISRQ8TF01 805 aaKnown RBP10.62□□□□□ -0.71
RIF1-211ENST00000494333 TMEM88BA6NKF7 163 aa10.61□□□□□ -0.71
RIF1-211ENST00000494333 PHKA2P46019 1235 aa10.61□□□□□ -0.71
RIF1-211ENST00000494333 PTSQ03393 145 aa10.61□□□□□ -0.71
RIF1-211ENST00000494333 DALRD3Q5D0E6 543 aaKnown RBP10.61□□□□□ -0.71
RIF1-211ENST00000494333 NIFKQ9BYG3 293 aaKnown RBP10.61□□□□□ -0.71
RIF1-211ENST00000494333 CARNS1A5YM72 827 aa10.6□□□□□ -0.71
RIF1-211ENST00000494333 C21orf2O43822 256 aa10.6□□□□□ -0.71
RIF1-211ENST00000494333 ZEB1P37275 1124 aaPredicted RBP10.6□□□□□ -0.71
RIF1-211ENST00000494333 WDR44Q5JSH3 913 aa10.6□□□□□ -0.71
RIF1-211ENST00000494333 SCG3Q8WXD2 468 aaKnown RBP10.6□□□□□ -0.71
RIF1-211ENST00000494333 PRKRIP1Q9H875 184 aaPredicted RBP10.6□□□□□ -0.71
RIF1-211ENST00000494333 C4AP0C0L4 1744 aa10.6□□□□□ -0.71
RIF1-211ENST00000494333 SENP3-EIF4A1A0A087X0R7 540 aa10.59□□□□□ -0.71
RIF1-211ENST00000494333 CAMTA2O94983 1202 aa10.59□□□□□ -0.71
RIF1-211ENST00000494333 TMPOP42166 694 aaKnown RBP10.59□□□□□ -0.71
RIF1-211ENST00000494333 EIF4A1P60842 406 aaKnown RBP10.59□□□□□ -0.71
RIF1-211ENST00000494333 WDR43Q15061 677 aaKnown RBP eCLIP10.59□□□□□ -0.71
RIF1-211ENST00000494333 CCDC146Q8IYE0 955 aa10.59□□□□□ -0.71
RIF1-211ENST00000494333 RETREG2Q8NC44 543 aa10.59□□□□□ -0.71
RIF1-211ENST00000494333 SETDB2Q96T68 719 aa10.59□□□□□ -0.71
RIF1-211ENST00000494333 RRP7AQ9Y3A4 280 aaKnown RBP10.59□□□□□ -0.71
RIF1-211ENST00000494333 UBR2Q8IWV8 1755 aa10.59□□□□□ -0.71
RIF1-211ENST00000494333 GOLGB1Q14789 3259 aaKnown RBP10.59□□□□□ -0.71
RIF1-211ENST00000494333 CHD4Q14839 1912 aa10.58□□□□□ -0.72
RIF1-211ENST00000494333 H0YIN7 160 aa10.58□□□□□ -0.72
RIF1-211ENST00000494333 NPHP1O15259 732 aa10.58□□□□□ -0.72
RIF1-211ENST00000494333 PLA2G4AP47712 749 aa10.58□□□□□ -0.72
RIF1-211ENST00000494333 C1QTNF8P60827 252 aa10.58□□□□□ -0.72
RIF1-211ENST00000494333 TEAD4Q15561 434 aa10.58□□□□□ -0.72
RIF1-211ENST00000494333 NGEFQ8N5V2 710 aa10.58□□□□□ -0.72
RIF1-211ENST00000494333 ZNF526Q8TF50 670 aaPredicted RBP10.58□□□□□ -0.72
RIF1-211ENST00000494333 ZDHHC1Q8WTX9 485 aa10.58□□□□□ -0.72
RIF1-211ENST00000494333 PRIMPOLQ96LW4 560 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms