RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 WDR18Q9BV38 432 aa8.58□□□□□ -1.04
SMC4-223ENST00000493695 PAK6Q9NQU5 681 aaPredicted RBP8.58□□□□□ -1.04
SMC4-223ENST00000493695 EGFL7Q9UHF1 273 aa8.58□□□□□ -1.04
SMC4-223ENST00000493695 FZD5Q13467 585 aa8.57□□□□□ -1.04
SMC4-223ENST00000493695 ARHGAP27Q6ZUM4 889 aa8.57□□□□□ -1.04
SMC4-223ENST00000493695 PPP1R9AQ9ULJ8 1098 aa8.57□□□□□ -1.04
SMC4-223ENST00000493695 RNGTTO60942 597 aaKnown RBP8.56□□□□□ -1.04
SMC4-223ENST00000493695 SLFN14P0C7P3 912 aa8.56□□□□□ -1.04
SMC4-223ENST00000493695 CDK5R2Q13319 367 aa8.56□□□□□ -1.04
SMC4-223ENST00000493695 OGFOD3Q6PK18 319 aa8.56□□□□□ -1.04
SMC4-223ENST00000493695 NFXL1Q6ZNB6 911 aa8.56□□□□□ -1.04
SMC4-223ENST00000493695 NIF3L1Q9GZT8 377 aa8.56□□□□□ -1.04
SMC4-223ENST00000493695 C1orf115Q9H7X2 142 aa8.56□□□□□ -1.04
SMC4-223ENST00000493695 C1GALT1Q9NS00 363 aa8.56□□□□□ -1.04
SMC4-223ENST00000493695 JUNBP17275 347 aaPredicted RBP8.55□□□□□ -1.04
SMC4-223ENST00000493695 HNRNPUQ00839 825 aaKnown RBP eCLIP8.55□□□□□ -1.04
SMC4-223ENST00000493695 ZNF574Q6ZN55 896 aaPredicted RBP8.55□□□□□ -1.04
SMC4-223ENST00000493695 CBLL1Q75N03 491 aa8.55□□□□□ -1.04
SMC4-223ENST00000493695 CCDC74AQ96AQ1 378 aa8.55□□□□□ -1.04
SMC4-223ENST00000493695 SSU72Q9NP77 194 aaKnown RBP8.55□□□□□ -1.04
SMC4-223ENST00000493695 FAM87AP0C7U9 286 aa8.54□□□□□ -1.04
SMC4-223ENST00000493695 ITPKAP23677 461 aa8.54□□□□□ -1.04
SMC4-223ENST00000493695 WDR89Q96FK6 387 aaPredicted RBP8.54□□□□□ -1.04
SMC4-223ENST00000493695 GPN3Q9UHW5 284 aaPredicted RBP8.54□□□□□ -1.04
SMC4-223ENST00000493695 TMEM238LA0A1B0GVL6 79 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 EIF1AYO14602 144 aaKnown RBP8.53□□□□□ -1.04
SMC4-223ENST00000493695 BNIP3Q12983 259 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 DTHD1Q6ZMT9 781 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 STK11IPQ8N1F8 1099 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 FAM181AQ8N9Y4 354 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 BCL7CQ8WUZ0 217 aaPredicted RBP8.53□□□□□ -1.04
SMC4-223ENST00000493695 KCNB2Q92953 911 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 ATXN3LQ9H3M9 355 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 CCDC86Q9H6F5 360 aaKnown RBP8.53□□□□□ -1.04
SMC4-223ENST00000493695 ABCB6Q9NP58 842 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 PPP4R2Q9NY27 417 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 TRAK1Q9UPV9 953 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 USTQ9Y2C2 406 aa8.53□□□□□ -1.04
SMC4-223ENST00000493695 BIN1O00499 593 aa8.52□□□□□ -1.05
SMC4-223ENST00000493695 TMPRSS2O15393 492 aa8.52□□□□□ -1.05
SMC4-223ENST00000493695 ARHGAP4P98171 946 aa8.52□□□□□ -1.05
SMC4-223ENST00000493695 ID3Q02535 119 aa8.52□□□□□ -1.05
SMC4-223ENST00000493695 COL19A1Q14993 1142 aa8.52□□□□□ -1.05
SMC4-223ENST00000493695 PLD6Q8N2A8 252 aaKnown RBP8.52□□□□□ -1.05
SMC4-223ENST00000493695 HCLS1P14317 486 aaPredicted RBP8.51□□□□□ -1.05
SMC4-223ENST00000493695 FCGRTP55899 365 aa8.51□□□□□ -1.05
SMC4-223ENST00000493695 SEZ6L2Q6UXD5 910 aa8.51□□□□□ -1.05
SMC4-223ENST00000493695 SMYD4Q8IYR2 804 aaPredicted RBP8.51□□□□□ -1.05
SMC4-223ENST00000493695 FANCD2OSQ96PS1 177 aa8.51□□□□□ -1.05
SMC4-223ENST00000493695 GSX1Q9H4S2 264 aaPredicted RBP8.51□□□□□ -1.05
SMC4-223ENST00000493695 PTPN12Q05209 780 aaKnown RBP8.5□□□□□ -1.05
SMC4-223ENST00000493695 PPP2R3AQ06190 1150 aa8.5□□□□□ -1.05
SMC4-223ENST00000493695 ZNF792Q3KQV3 632 aa8.5□□□□□ -1.05
SMC4-223ENST00000493695 SPRED2Q7Z698 418 aa8.5□□□□□ -1.05
SMC4-223ENST00000493695 C14orf37Q86TY3 774 aa8.5□□□□□ -1.05
SMC4-223ENST00000493695 NETO1Q8TDF5 533 aa8.5□□□□□ -1.05
SMC4-223ENST00000493695 EPS8L3Q8TE67 593 aaKnown RBP8.5□□□□□ -1.05
SMC4-223ENST00000493695 FAM129BQ96TA1 746 aa8.5□□□□□ -1.05
SMC4-223ENST00000493695 DNAJC25Q9H1X3 360 aa8.5□□□□□ -1.05
SMC4-223ENST00000493695 NLRP2Q9NX02 1062 aa8.5□□□□□ -1.05
SMC4-223ENST00000493695 CRIM1Q9NZV1 1036 aa8.5□□□□□ -1.05
SMC4-223ENST00000493695 C8AP07357 584 aa8.49□□□□□ -1.05
SMC4-223ENST00000493695 GSTP1P09211 210 aaKnown RBP8.49□□□□□ -1.05
SMC4-223ENST00000493695 ITGB5P18084 799 aa8.49□□□□□ -1.05
SMC4-223ENST00000493695 FAAP100Q0VG06 881 aa8.49□□□□□ -1.05
SMC4-223ENST00000493695 GRM2Q14416 872 aa8.49□□□□□ -1.05
SMC4-223ENST00000493695 TTLL4Q14679 1199 aa8.49□□□□□ -1.05
SMC4-223ENST00000493695 RPS26P11Q5JNZ5 115 aaPredicted RBP8.49□□□□□ -1.05
SMC4-223ENST00000493695 MISP3Q96FF7 219 aa8.49□□□□□ -1.05
SMC4-223ENST00000493695 CITED4Q96RK1 184 aa8.49□□□□□ -1.05
SMC4-223ENST00000493695 ARID3AQ99856 593 aa8.49□□□□□ -1.05
SMC4-223ENST00000493695 KRTAP4-8A0A0G2JLE6 195 aa8.48□□□□□ -1.05
SMC4-223ENST00000493695 GPR182O15218 404 aa8.48□□□□□ -1.05
SMC4-223ENST00000493695 ECM1Q16610 540 aa8.48□□□□□ -1.05
SMC4-223ENST00000493695 PRPF40BQ6NWY9 871 aaKnown RBP8.48□□□□□ -1.05
SMC4-223ENST00000493695 AKAP2Q9Y2D5 859 aa8.48□□□□□ -1.05
SMC4-223ENST00000493695 ZNF862O60290 1169 aa8.47□□□□□ -1.05
SMC4-223ENST00000493695 CD96P40200 585 aa8.47□□□□□ -1.05
SMC4-223ENST00000493695 PI4K2BQ8TCG2 481 aa8.47□□□□□ -1.05
SMC4-223ENST00000493695 ACSBG1Q96GR2 724 aa8.47□□□□□ -1.05
SMC4-223ENST00000493695 CSRNP1Q96S65 589 aa8.47□□□□□ -1.05
SMC4-223ENST00000493695 RC3H2Q9HBD1 1191 aaKnown RBP8.47□□□□□ -1.05
SMC4-223ENST00000493695 PICK1Q9NRD5 415 aa8.47□□□□□ -1.05
SMC4-223ENST00000493695 TMEM39AQ9NV64 488 aa8.47□□□□□ -1.05
SMC4-223ENST00000493695 CD8BP10966 210 aa8.46□□□□□ -1.06
SMC4-223ENST00000493695 ITIH2P19823 946 aa8.46□□□□□ -1.06
SMC4-223ENST00000493695 ZNF648Q5T619 568 aaPredicted RBP8.46□□□□□ -1.06
SMC4-223ENST00000493695 POU5F2Q8N7G0 328 aa8.46□□□□□ -1.06
SMC4-223ENST00000493695 CBX8Q9HC52 389 aa8.46□□□□□ -1.06
SMC4-223ENST00000493695 DISC1Q9NRI5 854 aa8.46□□□□□ -1.06
SMC4-223ENST00000493695 PCOLCE2Q9UKZ9 415 aa8.46□□□□□ -1.06
SMC4-223ENST00000493695 SYNGAP1Q96PV0 1343 aa8.46□□□□□ -1.06
SMC4-223ENST00000493695 LEFTY1O75610 366 aa8.45□□□□□ -1.06
SMC4-223ENST00000493695 PAPLNO95428 1278 aa8.45□□□□□ -1.06
SMC4-223ENST00000493695 AOC3Q16853 763 aa8.45□□□□□ -1.06
SMC4-223ENST00000493695 MAP1SQ66K74 1059 aaPredicted RBP8.45□□□□□ -1.06
SMC4-223ENST00000493695 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.45□□□□□ -1.06
SMC4-223ENST00000493695 DMRTB1Q96MA1 342 aa8.45□□□□□ -1.06
SMC4-223ENST00000493695 BIN2Q9UBW5 565 aaPredicted RBP8.45□□□□□ -1.06
SMC4-223ENST00000493695 ARID1BQ8NFD5 2236 aaPredicted RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms