RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 MBD4O95243 580 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 PTH1RQ03431 593 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 BECN1Q14457 450 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 CREB3L3Q68CJ9 461 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 KLHL34Q8N239 644 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 MTMR14Q8NCE2 650 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 NLGN2Q8NFZ4 835 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 ZNF384Q8TF68 577 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 TEKT1Q969V4 418 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 SEC62Q99442 399 aaKnown RBP11.51□□□□□ -0.57
USP54-214ENST00000492357 MTA3Q9BTC8 594 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 ALDH8A1Q9H2A2 487 aaPredicted RBP11.51□□□□□ -0.57
USP54-214ENST00000492357 DBNDD1Q9H9R9 158 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 WDR19Q8NEZ3 1342 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 TIAM2Q8IVF5 1701 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 FOCADQ5VW36 1801 aa11.51□□□□□ -0.57
USP54-214ENST00000492357 LMNB1P20700 586 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 DOK7Q18PE1 504 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 SBK1Q52WX2 424 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 RSBN1LQ6PCB5 846 aaPredicted RBP11.5□□□□□ -0.57
USP54-214ENST00000492357 SLC51AQ86UW1 340 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 DPF2Q92785 391 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 ZDHHC15Q96MV8 337 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 GMLQ99445 158 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 KIF2CQ99661 725 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 ARPP21Q9UBL0 812 aaPredicted RBP11.5□□□□□ -0.57
USP54-214ENST00000492357 ANAPC4Q9UJX5 808 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 HDAC9Q9UKV0 1011 aa11.5□□□□□ -0.57
USP54-214ENST00000492357 COL2A1P02458 1487 aaPredicted RBP11.5□□□□□ -0.57
USP54-214ENST00000492357 GSG1L2A8MUP6 293 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 FZD9O00144 591 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 SLC27A2O14975 620 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 GRIN3BO60391 1043 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 FGAP02671 866 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 CIAPIN1Q6FI81 312 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 AMOTL1Q8IY63 956 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 IFNL3Q8IZI9 196 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 FBXL16Q8N461 479 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 OGFOD1Q8N543 542 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 CERS5Q8N5B7 392 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 NAPBQ9H115 298 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 RNF41Q9H4P4 317 aaPredicted RBP11.49□□□□□ -0.57
USP54-214ENST00000492357 CNNM2Q9H8M5 875 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 ZNF277Q9NRM2 450 aaPredicted RBP11.49□□□□□ -0.57
USP54-214ENST00000492357 TTF2Q9UNY4 1162 aaKnown RBP11.49□□□□□ -0.57
USP54-214ENST00000492357 SNX14Q9Y5W7 946 aa11.49□□□□□ -0.57
USP54-214ENST00000492357 YDJCA8MPS7 323 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 ZNF213O14771 459 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 FOXP2O15409 715 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 CYP21A2P08686 494 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 EIF6P56537 245 aaKnown RBP11.48□□□□□ -0.57
USP54-214ENST00000492357 FKBP1CQ5VVH2 108 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 CCDC129Q6ZRS4 1044 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 ADGRA1Q86SQ6 560 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 LCORLQ8N3X6 602 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 CHMP4CQ96CF2 233 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 ARMT1Q9H993 441 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 ZSWIM6Q9HCJ5 1215 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 SLC4A4Q9Y6R1 1079 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 DDX60LQ5H9U9 1706 aaKnown RBP11.48□□□□□ -0.57
USP54-214ENST00000492357 LAMB1P07942 1786 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 SBF1O95248 1867 aa11.48□□□□□ -0.57
USP54-214ENST00000492357 ECM29Q5VYK3 1845 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 COL4A5P29400 1685 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 ROBO3Q96MS0 1386 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 APPP05067 770 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 SLC3A2P08195 630 aaKnown RBP11.47□□□□□ -0.57
USP54-214ENST00000492357 BTDP43251 543 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 ANKRD1Q15327 319 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 VPS53Q5VIR6 699 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 ZNF287Q9HBT7 754 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 MKRN1Q9UHC7 482 aaKnown RBP11.47□□□□□ -0.57
USP54-214ENST00000492357 DAGLAQ9Y4D2 1042 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 CYP46A1Q9Y6A2 500 aa11.47□□□□□ -0.57
USP54-214ENST00000492357 NAV1Q8NEY1 1877 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 CDK5RAP2Q96SN8 1893 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 FGRP09769 529 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 USP17L8P0C7I0 530 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 CRKP46108 304 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 TDO2P48775 406 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 RHBDL3P58872 404 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 CXCL9Q07325 125 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 TRDNQ13061 729 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 DIXDC1Q155Q3 683 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 RUFY3Q7L099 469 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 MIGA1Q8NAN2 632 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 NCOA7Q8NI08 942 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 NEK1Q96PY6 1258 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 IDI2Q9BXS1 227 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 KRT23Q9C075 422 aa11.46□□□□□ -0.57
USP54-214ENST00000492357 DCP1AQ9NPI6 582 aaPredicted RBP11.46□□□□□ -0.57
USP54-214ENST00000492357 AATFQ9NY61 560 aaKnown RBP eCLIP11.46□□□□□ -0.57
USP54-214ENST00000492357 PSMD14O00487 310 aa11.45□□□□□ -0.58
USP54-214ENST00000492357 CHGBP05060 677 aa11.45□□□□□ -0.58
USP54-214ENST00000492357 ZNF280AP59817 542 aaPredicted RBP11.45□□□□□ -0.58
USP54-214ENST00000492357 BLOC1S2Q6QNY1 142 aa11.45□□□□□ -0.58
USP54-214ENST00000492357 HSCBQ8IWL3 235 aa11.45□□□□□ -0.58
USP54-214ENST00000492357 RASEFQ8IZ41 740 aa11.45□□□□□ -0.58
USP54-214ENST00000492357 GPC2Q8N158 579 aa11.45□□□□□ -0.58
USP54-214ENST00000492357 STAG1Q8WVM7 1258 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms