RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 NBPF3Q9H094 633 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 CNPY2Q9Y2B0 182 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 DHX29Q7Z478 1369 aaKnown RBP14.74□□□□□ -0.05
COL6A3-212ENST00000491769 ANKRD36BQ8N2N9 1353 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 TRERF1Q96PN7 1200 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 SORBS3O60504 671 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 GTF2F1P35269 517 aaKnown RBP eCLIP14.74□□□□□ -0.05
COL6A3-212ENST00000491769 KIAA0586Q9BVV6 1533 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 TRAF5O00463 557 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 NR1I2O75469 434 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 ITGA6P23229 1130 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 MRRFQ96E11 262 aaKnown RBP14.74□□□□□ -0.05
COL6A3-212ENST00000491769 KRT83P78385 493 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 DAAM2Q86T65 1068 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 NOX5Q96PH1 765 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 FAM193BQ96PV7 902 aaPredicted RBP14.74□□□□□ -0.05
COL6A3-212ENST00000491769 CDCA7Q9BWT1 371 aaPredicted RBP14.74□□□□□ -0.05
COL6A3-212ENST00000491769 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.74□□□□□ -0.05
COL6A3-212ENST00000491769 VWA3AA6NCI4 1184 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 GIPC1O14908 333 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 PRPF6O94906 941 aaKnown RBP14.74□□□□□ -0.05
COL6A3-212ENST00000491769 METTL13Q8N6R0 699 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 UHRF1BP1LA0JNW5 1464 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 SPTLC2O15270 562 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 MTUS1Q9ULD2 1270 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 PLB1Q6P1J6 1458 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 ATXN8OSP0DMR3 200 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 AATFQ9NY61 560 aaKnown RBP eCLIP14.73□□□□□ -0.05
COL6A3-212ENST00000491769 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.73□□□□□ -0.05
COL6A3-212ENST00000491769 ALDH3A1P30838 453 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 MTHFSDQ2M296 383 aaKnown RBP14.73□□□□□ -0.05
COL6A3-212ENST00000491769 TTC14Q96N46 770 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 MED10Q9BTT4 135 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 ARMT1Q9H993 441 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 DYNC1I1O14576 645 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 SPOPO43791 374 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 SDSP20132 328 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 CCDC129Q6ZRS4 1044 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 NAP1L3Q99457 506 aaPredicted RBP14.73□□□□□ -0.05
COL6A3-212ENST00000491769 PRKAG2Q9UGJ0 569 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 TLDC2A0PJX2 215 aa14.73□□□□□ -0.05
COL6A3-212ENST00000491769 ERCC5P28715 1186 aaPredicted RBP14.73□□□□□ -0.05
COL6A3-212ENST00000491769 NOP9Q86U38 636 aaKnown RBP14.73□□□□□ -0.05
COL6A3-212ENST00000491769 TNFAIP3P21580 790 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 SATB1Q01826 763 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 LIN9Q5TKA1 542 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 IFT81Q8WYA0 676 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 GLG1Q92896 1179 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 DCPSQ96C86 337 aaKnown RBP14.72□□□□□ -0.05
COL6A3-212ENST00000491769 TMX3Q96JJ7 454 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 HAUS2Q9NVX0 235 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 ZRANB1Q9UGI0 708 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.72□□□□□ -0.05
COL6A3-212ENST00000491769 V9GYY5 206 aaPredicted RBP14.72□□□□□ -0.05
COL6A3-212ENST00000491769 SPDYE16A6NNV3 312 aaPredicted RBP14.72□□□□□ -0.05
COL6A3-212ENST00000491769 SLC1A4P43007 532 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 EIF4A2Q14240 407 aaKnown RBP14.72□□□□□ -0.05
COL6A3-212ENST00000491769 SPDYE2Q495Y8 402 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 CARD10Q9BWT7 1032 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 GCP02774 474 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 PARP10Q53GL7 1025 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 GUCA1BQ9UMX6 200 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 KRT86O43790 486 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 HSPA4P34932 840 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 ATRIPQ8WXE1 791 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 CFBP00751 764 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 BICC1Q9H694 974 aaKnown RBP14.72□□□□□ -0.05
COL6A3-212ENST00000491769 CD2APQ9Y5K6 639 aa14.72□□□□□ -0.05
COL6A3-212ENST00000491769 ATP8B2P98198 1209 aa14.71□□□□□ -0.05
COL6A3-212ENST00000491769 IFRD2Q12894 506 aaPredicted RBP14.71□□□□□ -0.05
COL6A3-212ENST00000491769 HAUS3Q68CZ6 603 aa14.71□□□□□ -0.05
COL6A3-212ENST00000491769 PRDM10Q9NQV6 1147 aa14.71□□□□□ -0.05
COL6A3-212ENST00000491769 MTRF1LQ9UGC7 380 aaKnown RBP14.71□□□□□ -0.05
COL6A3-212ENST00000491769 SCAF11Q99590 1463 aaKnown RBP14.71□□□□□ -0.05
COL6A3-212ENST00000491769 CALUO43852 315 aaPredicted RBP14.71□□□□□ -0.05
COL6A3-212ENST00000491769 CALCOCO2Q13137 446 aa14.71□□□□□ -0.05
COL6A3-212ENST00000491769 JAKMIP2Q96AA8 810 aa14.71□□□□□ -0.05
COL6A3-212ENST00000491769 IQGAP2Q13576 1575 aa14.71□□□□□ -0.05
COL6A3-212ENST00000491769 ALDH1B1P30837 517 aa14.71□□□□□ -0.05
COL6A3-212ENST00000491769 LINS1Q8NG48 757 aa14.71□□□□□ -0.05
COL6A3-212ENST00000491769 GABPB2Q8TAK5 448 aaPredicted RBP14.71□□□□□ -0.05
COL6A3-212ENST00000491769 RIMS2Q9UQ26 1411 aa14.71□□□□□ -0.06
COL6A3-212ENST00000491769 PALM3A6NDB9 673 aaPredicted RBP14.71□□□□□ -0.06
COL6A3-212ENST00000491769 NOL3O60936 208 aaKnown RBP14.71□□□□□ -0.06
COL6A3-212ENST00000491769 ZBTB9Q96C00 473 aa14.71□□□□□ -0.06
COL6A3-212ENST00000491769 SEC62Q99442 399 aaKnown RBP14.71□□□□□ -0.06
COL6A3-212ENST00000491769 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.71□□□□□ -0.06
COL6A3-212ENST00000491769 AS3MTQ9HBK9 375 aa14.71□□□□□ -0.06
COL6A3-212ENST00000491769 CTAGE9A4FU28 777 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 BMP2KLQ5H9B9 411 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 RPUSD2Q8IZ73 545 aaKnown RBP14.7□□□□□ -0.06
COL6A3-212ENST00000491769 MYCP01106 439 aaPredicted RBP14.7□□□□□ -0.06
COL6A3-212ENST00000491769 HSPA1LP34931 641 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 TXKP42681 527 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 VPS52Q8N1B4 723 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 MLXIPQ9HAP2 919 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 TRPC6Q9Y210 931 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 USTQ9Y2C2 406 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 RNMTO43148 476 aaKnown RBP14.7□□□□□ -0.06
COL6A3-212ENST00000491769 CD19P15391 556 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms