RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 RBM25P49756 843 aaKnown RBP8.35□□□□□ -1.07
SYNE1-229ENST00000490866 ERICH6Q7L0X2 663 aa8.35□□□□□ -1.07
SYNE1-229ENST00000490866 HELBQ8NG08 1087 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-229ENST00000490866 KCNV2Q8TDN2 545 aa8.35□□□□□ -1.07
SYNE1-229ENST00000490866 OTUD7AQ8TE49 926 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-229ENST00000490866 C7orf43Q8WVR3 580 aa8.35□□□□□ -1.07
SYNE1-229ENST00000490866 DNAJC2Q99543 621 aaKnown RBP8.35□□□□□ -1.07
SYNE1-229ENST00000490866 NOL10Q9BSC4 688 aaKnown RBP8.35□□□□□ -1.07
SYNE1-229ENST00000490866 ESYT1Q9BSJ8 1104 aa8.35□□□□□ -1.07
SYNE1-229ENST00000490866 NACAP1Q9BZK3 213 aa8.35□□□□□ -1.07
SYNE1-229ENST00000490866 HMG20BQ9P0W2 317 aa8.35□□□□□ -1.07
SYNE1-229ENST00000490866 MYO3BQ8WXR4 1341 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 LRP5O75197 1615 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 GOLIM4O00461 696 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 HMGB1P09429 215 aaKnown RBP8.34□□□□□ -1.07
SYNE1-229ENST00000490866 ANP32AP39687 249 aaKnown RBP8.34□□□□□ -1.07
SYNE1-229ENST00000490866 BCAMP50895 628 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 GPSM2P81274 684 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 HDLBPQ00341 1268 aaKnown RBP8.34□□□□□ -1.07
SYNE1-229ENST00000490866 KRT32Q14532 448 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 NBR1Q14596 966 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 SLC9C2Q5TAH2 1124 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 APPBP2Q92624 585 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 C22orf23Q9BZE7 217 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 CD209Q9NNX6 404 aa8.34□□□□□ -1.07
SYNE1-229ENST00000490866 DAXXQ9UER7 740 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-229ENST00000490866 FAM205AQ6ZU69 1335 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 BHMG1C9JSJ3 638 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-229ENST00000490866 SGSM2O43147 1006 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 LDHBP07195 334 aaKnown RBP8.33□□□□□ -1.08
SYNE1-229ENST00000490866 PCP11498 1178 aaKnown RBP8.33□□□□□ -1.08
SYNE1-229ENST00000490866 DPEP1P16444 411 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 PSMA5P28066 241 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 MCAMP43121 646 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 PHKA1P46020 1223 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 MCM2P49736 904 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 KIAA2012Q0VF49 1180 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 BECN1Q14457 450 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 STRIP1Q5VSL9 837 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 GIMAP6Q6P9H5 292 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 CWC27Q6UX04 472 aaKnown RBP8.33□□□□□ -1.08
SYNE1-229ENST00000490866 CCDC24Q8N4L8 307 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 JDP2Q8WYK2 163 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 DSCC1Q9BVC3 393 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 USP26Q9BXU7 913 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 TLR7Q9NYK1 1049 aaKnown RBP8.33□□□□□ -1.08
SYNE1-229ENST00000490866 PPP1R1BQ9UD71 204 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-229ENST00000490866 POLLQ9UGP5 575 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 KIF13BQ9NQT8 1826 aa8.33□□□□□ -1.08
SYNE1-229ENST00000490866 LTBP3Q9NS15 1303 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 A0A0G2JLW4 131 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 CYP2E1P05181 493 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-229ENST00000490866 ADORA1P30542 326 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 ZAP70P43403 619 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 GYG1P46976 350 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 RASGRF1Q13972 1273 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 TNIP1Q15025 636 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 TSGA10IPQ3SY00 556 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 ZMYM1Q5SVZ6 1142 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 TTLL5Q6EMB2 1281 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 AMOTL1Q8IY63 956 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 MAP4K1Q92918 833 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 AIDAQ96BJ3 306 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 NBPF3Q9H094 633 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 ZNF287Q9HBT7 754 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 RABGEF1Q9UJ41 708 aa8.32□□□□□ -1.08
SYNE1-229ENST00000490866 DUOX1Q9NRD9 1551 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 AK9Q5TCS8 1911 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 GRXCR2A6NFK2 248 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 PATL2C9JE40 543 aaKnown RBP8.31□□□□□ -1.08
SYNE1-229ENST00000490866 MAP3K7O43318 606 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 IDH1O75874 414 aaKnown RBP8.31□□□□□ -1.08
SYNE1-229ENST00000490866 SLC3A2P08195 630 aaKnown RBP8.31□□□□□ -1.08
SYNE1-229ENST00000490866 PDIA4P13667 645 aaKnown RBP8.31□□□□□ -1.08
SYNE1-229ENST00000490866 KCNA3P22001 575 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 OSBPP22059 807 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 CHRNA5P30532 468 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 ADD2P35612 726 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 ALX1Q15699 326 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 NAA16Q6N069 864 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-229ENST00000490866 DZIP1Q86YF9 867 aaKnown RBP8.31□□□□□ -1.08
SYNE1-229ENST00000490866 OGFOD1Q8N543 542 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 IL17RAQ96F46 866 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 TBC1D32Q96NH3 1257 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 TAOK3Q9H2K8 898 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 ANO2Q9NQ90 1003 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 ATP8A2Q9NTI2 1148 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 RAI14Q9P0K7 980 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 ABCF2Q9UG63 623 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 ARAP2Q8WZ64 1704 aa8.31□□□□□ -1.08
SYNE1-229ENST00000490866 IRS2Q9Y4H2 1338 aa8.3□□□□□ -1.08
SYNE1-229ENST00000490866 CASZ1Q86V15 1759 aa8.3□□□□□ -1.08
SYNE1-229ENST00000490866 ANKRD31Q8N7Z5 1873 aa8.3□□□□□ -1.08
SYNE1-229ENST00000490866 USP17L3A6NCW0 530 aa8.3□□□□□ -1.08
SYNE1-229ENST00000490866 USP17L4A6NCW7 530 aa8.3□□□□□ -1.08
SYNE1-229ENST00000490866 C21orf2O43822 256 aa8.3□□□□□ -1.08
SYNE1-229ENST00000490866 GRIN3BO60391 1043 aa8.3□□□□□ -1.08
SYNE1-229ENST00000490866 COL9A1P20849 921 aa8.3□□□□□ -1.08
SYNE1-229ENST00000490866 HSPA4P34932 840 aa8.3□□□□□ -1.08
SYNE1-229ENST00000490866 PPP4CP60510 307 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms