RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 CHPF2Q9P2E5 772 aa9.51□□□□□ -0.89
COL9A1-209ENST00000489861 OGDHLQ9ULD0 1010 aa9.51□□□□□ -0.89
COL9A1-209ENST00000489861 PLXNB2O15031 1838 aa9.51□□□□□ -0.89
COL9A1-209ENST00000489861 ZDBF2Q9HCK1 2354 aa9.51□□□□□ -0.89
COL9A1-209ENST00000489861 TNPO2O14787 897 aaKnown RBP9.5□□□□□ -0.89
COL9A1-209ENST00000489861 KRT24Q2M2I5 525 aa9.5□□□□□ -0.89
COL9A1-209ENST00000489861 GPAT2Q6NUI2 795 aa9.5□□□□□ -0.89
COL9A1-209ENST00000489861 NECAB3Q96P71 396 aaPredicted RBP9.5□□□□□ -0.89
COL9A1-209ENST00000489861 KCNH4Q9UQ05 1017 aa9.5□□□□□ -0.89
COL9A1-209ENST00000489861 JAG2Q9Y219 1238 aa9.5□□□□□ -0.89
COL9A1-209ENST00000489861 NUDCQ9Y266 331 aa9.5□□□□□ -0.89
COL9A1-209ENST00000489861 LEMD3Q9Y2U8 911 aa9.5□□□□□ -0.89
COL9A1-209ENST00000489861 HCN4Q9Y3Q4 1203 aa9.5□□□□□ -0.89
COL9A1-209ENST00000489861 REV3LO60673 3130 aa9.5□□□□□ -0.89
COL9A1-209ENST00000489861 A0A1B0GUL6 1792 aa9.5□□□□□ -0.89
COL9A1-209ENST00000489861 FRMPD3Q5JV73 1810 aa9.49□□□□□ -0.89
COL9A1-209ENST00000489861 SNAP23O00161 211 aa9.49□□□□□ -0.89
COL9A1-209ENST00000489861 SMAD3P84022 425 aaKnown RBP9.49□□□□□ -0.89
COL9A1-209ENST00000489861 PPATQ06203 517 aa9.49□□□□□ -0.89
COL9A1-209ENST00000489861 GRIN2CQ14957 1233 aa9.49□□□□□ -0.89
COL9A1-209ENST00000489861 ATXN2LQ8WWM7 1075 aaKnown RBP9.49□□□□□ -0.89
COL9A1-209ENST00000489861 PARK7Q99497 189 aaKnown RBP9.49□□□□□ -0.89
COL9A1-209ENST00000489861 LBHD1Q9BQE6 289 aaPredicted RBP9.49□□□□□ -0.89
COL9A1-209ENST00000489861 PCCAP05165 728 aaPredicted RBP9.48□□□□□ -0.89
COL9A1-209ENST00000489861 INPP5BP32019 993 aa9.48□□□□□ -0.89
COL9A1-209ENST00000489861 CFAP53Q96M91 514 aa9.48□□□□□ -0.89
COL9A1-209ENST00000489861 CDC5LQ99459 802 aaKnown RBP9.48□□□□□ -0.89
COL9A1-209ENST00000489861 GREM2Q9H772 168 aa9.48□□□□□ -0.89
COL9A1-209ENST00000489861 HMX1Q9NP08 348 aaPredicted RBP9.48□□□□□ -0.89
COL9A1-209ENST00000489861 SPTBN4Q9H254 2564 aa9.47□□□□□ -0.89
COL9A1-209ENST00000489861 HMGCRP04035 888 aa9.47□□□□□ -0.89
COL9A1-209ENST00000489861 DZIP1LQ8IYY4 767 aaKnown RBP9.47□□□□□ -0.89
COL9A1-209ENST00000489861 TTLL11Q8NHH1 800 aa9.47□□□□□ -0.89
COL9A1-209ENST00000489861 PPM1EQ8WY54 764 aa9.47□□□□□ -0.89
COL9A1-209ENST00000489861 EPHX3Q9H6B9 360 aa9.47□□□□□ -0.89
COL9A1-209ENST00000489861 CHD9Q3L8U1 2897 aa9.46□□□□□ -0.89
COL9A1-209ENST00000489861 HSP90B1P14625 803 aaKnown RBP9.46□□□□□ -0.9
COL9A1-209ENST00000489861 CACNB3P54284 484 aa9.46□□□□□ -0.9
COL9A1-209ENST00000489861 CTSWP56202 376 aa9.46□□□□□ -0.9
COL9A1-209ENST00000489861 FKBP1AP62942 108 aaKnown RBP9.46□□□□□ -0.9
COL9A1-209ENST00000489861 NFE2L2Q16236 605 aa9.46□□□□□ -0.9
COL9A1-209ENST00000489861 POTEEQ6S8J3 1075 aa9.46□□□□□ -0.9
COL9A1-209ENST00000489861 PLEKHF1Q96S99 279 aa9.46□□□□□ -0.9
COL9A1-209ENST00000489861 THEGQ9P2T0 379 aa9.46□□□□□ -0.9
COL9A1-209ENST00000489861 XIRP2A4UGR9 3374 aa9.46□□□□□ -0.9
COL9A1-209ENST00000489861 RLFQ13129 1914 aa9.46□□□□□ -0.9
COL9A1-209ENST00000489861 NEFMP07197 916 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 IL1R1P14778 569 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 TNNI2P48788 182 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 MRE11P49959 708 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 MRPS5P82675 430 aaKnown RBP9.45□□□□□ -0.9
COL9A1-209ENST00000489861 MIGA2Q7L4E1 593 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 COA7Q96BR5 231 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 MYD88Q99836 296 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 SERPINA10Q9UK55 444 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 GJD2Q9UKL4 321 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 PHIPQ8WWQ0 1821 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 PLXNA1Q9UIW2 1896 aa9.45□□□□□ -0.9
COL9A1-209ENST00000489861 CACNA1GO43497 2377 aa9.44□□□□□ -0.9
COL9A1-209ENST00000489861 MAP3K21Q5TCX8 1036 aa9.44□□□□□ -0.9
COL9A1-209ENST00000489861 CCDC191Q8NCU4 936 aa9.44□□□□□ -0.9
COL9A1-209ENST00000489861 TRIB2Q92519 343 aa9.44□□□□□ -0.9
COL9A1-209ENST00000489861 P2RX7Q99572 595 aaKnown RBP9.44□□□□□ -0.9
COL9A1-209ENST00000489861 C11orf16Q9NQ32 467 aa9.44□□□□□ -0.9
COL9A1-209ENST00000489861 TTF2Q9UNY4 1162 aaKnown RBP9.44□□□□□ -0.9
COL9A1-209ENST00000489861 BRWD1Q9NSI6 2320 aa9.44□□□□□ -0.9
COL9A1-209ENST00000489861 WDFY4Q6ZS81 3184 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 CHD7Q9P2D1 2997 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 BMP1P13497 986 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 CRKP46108 304 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 CHRNDQ07001 517 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 GRIK5Q16478 980 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 HDGFL1Q5TGJ6 251 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 LHX8Q68G74 356 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 C15orf52Q6ZUT6 534 aaKnown RBP9.43□□□□□ -0.9
COL9A1-209ENST00000489861 RIC3Q7Z5B4 369 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 ANKRD13CQ8N6S4 541 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 ANKRD2Q9GZV1 360 aa9.43□□□□□ -0.9
COL9A1-209ENST00000489861 CWC25Q9NXE8 425 aaPredicted RBP9.43□□□□□ -0.9
COL9A1-209ENST00000489861 DBF4Q9UBU7 674 aaPredicted RBP9.43□□□□□ -0.9
COL9A1-209ENST00000489861 CXCL11O14625 94 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 TAF5LO75529 589 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 PRKAR2AP13861 404 aaKnown RBP9.42□□□□□ -0.9
COL9A1-209ENST00000489861 KCNJ4P48050 445 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 ATN1P54259 1190 aaPredicted RBP9.42□□□□□ -0.9
COL9A1-209ENST00000489861 PDE3AQ14432 1141 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 TMEM31Q5JXX7 168 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 MFSD14BQ5SR56 506 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 ZNF341Q9BYN7 854 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 SENP6Q9GZR1 1112 aaPredicted RBP9.42□□□□□ -0.9
COL9A1-209ENST00000489861 PHAXQ9H814 394 aaKnown RBP9.42□□□□□ -0.9
COL9A1-209ENST00000489861 BABAM1Q9NWV8 329 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 HYPKQ9NX55 129 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 ZNF112Q9UJU3 913 aa9.42□□□□□ -0.9
COL9A1-209ENST00000489861 PRRC2BQ5JSZ5 2229 aaKnown RBP9.41□□□□□ -0.9
COL9A1-209ENST00000489861 A0A0G2JLL6 359 aaPredicted RBP9.41□□□□□ -0.9
COL9A1-209ENST00000489861 FAM86C2PA6NEL3 165 aa9.41□□□□□ -0.9
COL9A1-209ENST00000489861 IGHMBP2P38935 993 aaKnown RBP9.41□□□□□ -0.9
COL9A1-209ENST00000489861 CCDC85BQ15834 202 aaPredicted RBP9.41□□□□□ -0.9
COL9A1-209ENST00000489861 AKNAD1Q5T1N1 836 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms