RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 TRIM44Q96DX7 344 aaPredicted RBP14.39□□□□□ -0.11
HDAC6-230ENST00000488543 ZC3H12CQ9C0D7 883 aaKnown RBP14.39□□□□□ -0.11
HDAC6-230ENST00000488543 EXOSC10Q01780 885 aaKnown RBP14.38□□□□□ -0.11
HDAC6-230ENST00000488543 ZSCAN23Q3MJ62 389 aa14.38□□□□□ -0.11
HDAC6-230ENST00000488543 MIGA1Q8NAN2 632 aa14.38□□□□□ -0.11
HDAC6-230ENST00000488543 DUOX1Q9NRD9 1551 aa14.38□□□□□ -0.11
HDAC6-230ENST00000488543 SEMA3EO15041 775 aa14.38□□□□□ -0.11
HDAC6-230ENST00000488543 BRD1O95696 1058 aa14.38□□□□□ -0.11
HDAC6-230ENST00000488543 NECAB1Q8N987 351 aa14.38□□□□□ -0.11
HDAC6-230ENST00000488543 KCNQ5Q9NR82 932 aa14.38□□□□□ -0.11
HDAC6-230ENST00000488543 LTBP1Q14766 1721 aa14.38□□□□□ -0.11
HDAC6-230ENST00000488543 MAST2Q6P0Q8 1798 aa14.38□□□□□ -0.11
HDAC6-230ENST00000488543 HAND2P61296 217 aa14.37□□□□□ -0.11
HDAC6-230ENST00000488543 Q6ZUG5 572 aa14.37□□□□□ -0.11
HDAC6-230ENST00000488543 DHX32Q7L7V1 743 aaKnown RBP14.37□□□□□ -0.11
HDAC6-230ENST00000488543 NBPF3Q9H094 633 aa14.37□□□□□ -0.11
HDAC6-230ENST00000488543 CHD4Q14839 1912 aa14.37□□□□□ -0.11
HDAC6-230ENST00000488543 PDS5AQ29RF7 1337 aaKnown RBP14.37□□□□□ -0.11
HDAC6-230ENST00000488543 MBD4O95243 580 aa14.37□□□□□ -0.11
HDAC6-230ENST00000488543 HMGB1P09429 215 aaKnown RBP14.37□□□□□ -0.11
HDAC6-230ENST00000488543 IL1R1P14778 569 aa14.37□□□□□ -0.11
HDAC6-230ENST00000488543 CYP7A1P22680 504 aa14.37□□□□□ -0.11
HDAC6-230ENST00000488543 IMMTQ16891 758 aaKnown RBP14.37□□□□□ -0.11
HDAC6-230ENST00000488543 DBNDD1Q9H9R9 158 aa14.37□□□□□ -0.11
HDAC6-230ENST00000488543 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.37□□□□□ -0.11
HDAC6-230ENST00000488543 MECOMQ03112 1051 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 ALX1Q15699 326 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 AIDAQ96BJ3 306 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 LRRC2Q9BYS8 371 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 AGXT2Q9BYV1 514 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 RBSNQ9H1K0 784 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 ARMT1Q9H993 441 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 EPB41L4AQ9HCS5 686 aaPredicted RBP14.36□□□□□ -0.11
HDAC6-230ENST00000488543 TIAM2Q8IVF5 1701 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 GTF2IP78347 998 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 NSUN4Q96CB9 384 aaKnown RBP14.36□□□□□ -0.11
HDAC6-230ENST00000488543 MXD3Q9BW11 206 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 ZMYM6O95789 1325 aa14.36□□□□□ -0.11
HDAC6-230ENST00000488543 PRKAB2O43741 272 aa14.35□□□□□ -0.11
HDAC6-230ENST00000488543 LCORLQ8N3X6 602 aa14.35□□□□□ -0.11
HDAC6-230ENST00000488543 SMC3Q9UQE7 1217 aa14.35□□□□□ -0.11
HDAC6-230ENST00000488543 KIAA1551Q9HCM1 1747 aa14.35□□□□□ -0.11
HDAC6-230ENST00000488543 CCDC88AQ3V6T2 1871 aa14.35□□□□□ -0.11
HDAC6-230ENST00000488543 PATL2C9JE40 543 aaKnown RBP14.35□□□□□ -0.11
HDAC6-230ENST00000488543 TGFB2P61812 414 aa14.35□□□□□ -0.11
HDAC6-230ENST00000488543 AOC3Q16853 763 aa14.35□□□□□ -0.11
HDAC6-230ENST00000488543 FBXW7Q969H0 707 aa14.35□□□□□ -0.11
HDAC6-230ENST00000488543 GDPD2Q9HCC8 539 aa14.35□□□□□ -0.11
HDAC6-230ENST00000488543 NPM3O75607 178 aaKnown RBP14.34□□□□□ -0.11
HDAC6-230ENST00000488543 NAA16Q6N069 864 aaPredicted RBP14.34□□□□□ -0.11
HDAC6-230ENST00000488543 TBC1D10CQ8IV04 446 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 MB21D2Q8IYB1 491 aaPredicted RBP14.34□□□□□ -0.11
HDAC6-230ENST00000488543 COA1Q9GZY4 146 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 TMEM63CQ9P1W3 806 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 PIM2Q9P1W9 311 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 GSG1L2A8MUP6 293 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 ZNF213O14771 459 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 APPP05067 770 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 DYNLL1P63167 89 aaKnown RBP14.34□□□□□ -0.11
HDAC6-230ENST00000488543 DIXDC1Q155Q3 683 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 NLGN2Q8NFZ4 835 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 WDR66Q8TBY9 1149 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 BRF1Q92994 677 aa14.34□□□□□ -0.11
HDAC6-230ENST00000488543 G3V3G9 751 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 PTMSP20962 102 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 GJB2P29033 226 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 MFSD14BQ5SR56 506 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 DCAF8Q5TAQ9 597 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 IFNL3Q8IZI9 196 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 FBXL16Q8N461 479 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 NKX2-3Q8TAU0 364 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 RTFDC1Q9BY42 306 aaPredicted RBP14.33□□□□□ -0.12
HDAC6-230ENST00000488543 ISY1Q9ULR0 285 aaKnown RBP14.33□□□□□ -0.12
HDAC6-230ENST00000488543 SNED1Q8TER0 1413 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 SYCE3A1L190 88 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 LDHBP07195 334 aaKnown RBP14.33□□□□□ -0.12
HDAC6-230ENST00000488543 ANTXR2P58335 489 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 CHST3Q7LGC8 479 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 GTF3C6Q969F1 213 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 EYA3Q99504 573 aa14.33□□□□□ -0.12
HDAC6-230ENST00000488543 SYT1P21579 422 aa14.32□□□□□ -0.12
HDAC6-230ENST00000488543 STK3Q13188 491 aa14.32□□□□□ -0.12
HDAC6-230ENST00000488543 RIOK1Q9BRS2 568 aaKnown RBP14.32□□□□□ -0.12
HDAC6-230ENST00000488543 ZNF277Q9NRM2 450 aaPredicted RBP14.32□□□□□ -0.12
HDAC6-230ENST00000488543 WDR33Q9C0J8 1336 aaKnown RBP14.32□□□□□ -0.12
HDAC6-230ENST00000488543 F8W031 263 aaPredicted RBP14.32□□□□□ -0.12
HDAC6-230ENST00000488543 GNAT2P19087 354 aa14.32□□□□□ -0.12
HDAC6-230ENST00000488543 APOBRQ0VD83 1088 aa14.32□□□□□ -0.12
HDAC6-230ENST00000488543 DZIP1Q86YF9 867 aaKnown RBP14.32□□□□□ -0.12
HDAC6-230ENST00000488543 CERS5Q8N5B7 392 aa14.32□□□□□ -0.12
HDAC6-230ENST00000488543 RNF214Q8ND24 703 aa14.32□□□□□ -0.12
HDAC6-230ENST00000488543 GPHNQ9NQX3 736 aaPredicted RBP14.32□□□□□ -0.12
HDAC6-230ENST00000488543 AATFQ9NY61 560 aaKnown RBP eCLIP14.32□□□□□ -0.12
HDAC6-230ENST00000488543 TACC3Q9Y6A5 838 aa14.32□□□□□ -0.12
HDAC6-230ENST00000488543 SALL1Q9NSC2 1324 aa14.31□□□□□ -0.12
HDAC6-230ENST00000488543 MAGEB6P1A0A0J9YX57 407 aa14.31□□□□□ -0.12
HDAC6-230ENST00000488543 PFKFB2O60825 505 aa14.31□□□□□ -0.12
HDAC6-230ENST00000488543 CCDC93Q567U6 631 aa14.31□□□□□ -0.12
HDAC6-230ENST00000488543 DALRD3Q5D0E6 543 aaKnown RBP14.31□□□□□ -0.12
HDAC6-230ENST00000488543 NCOA7Q8NI08 942 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms