RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 GLIS3Q8NEA6 775 aa7.49□□□□□ -1.21
SMC4-220ENST00000488017 TOX2Q96NM4 488 aa7.49□□□□□ -1.21
SMC4-220ENST00000488017 AP4E1Q9UPM8 1137 aa7.49□□□□□ -1.21
SMC4-220ENST00000488017 BUD31P41223 144 aaPredicted RBP7.48□□□□□ -1.21
SMC4-220ENST00000488017 GJD3Q8N144 294 aa7.48□□□□□ -1.21
SMC4-220ENST00000488017 CORO1BQ9BR76 489 aa7.48□□□□□ -1.21
SMC4-220ENST00000488017 CFPP27918 469 aa7.47□□□□□ -1.21
SMC4-220ENST00000488017 ZNF574Q6ZN55 896 aaPredicted RBP7.47□□□□□ -1.21
SMC4-220ENST00000488017 SPRED2Q7Z698 418 aa7.47□□□□□ -1.21
SMC4-220ENST00000488017 TCF12Q99081 682 aa7.47□□□□□ -1.21
SMC4-220ENST00000488017 LIN7BQ9HAP6 207 aa7.47□□□□□ -1.21
SMC4-220ENST00000488017 A0A1W2PP55 124 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 FZD6O60353 706 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 B3GALT4O96024 378 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 FUT4P22083 530 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 GRIA4P48058 902 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 C1QL4Q86Z23 238 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 SIAH1Q8IUQ4 282 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 GALNT12Q8IXK2 581 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 TRIM56Q9BRZ2 755 aaKnown RBP7.46□□□□□ -1.22
SMC4-220ENST00000488017 RAPGEFL1Q9UHV5 662 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 DAGLAQ9Y4D2 1042 aa7.46□□□□□ -1.22
SMC4-220ENST00000488017 DYNC1LI2O43237 492 aaPredicted RBP7.45□□□□□ -1.22
SMC4-220ENST00000488017 AOC2O75106 756 aa7.45□□□□□ -1.22
SMC4-220ENST00000488017 SSFA2P28290 1259 aa7.45□□□□□ -1.22
SMC4-220ENST00000488017 SF3B2Q13435 895 aaKnown RBP7.45□□□□□ -1.22
SMC4-220ENST00000488017 MTMR3Q13615 1198 aa7.45□□□□□ -1.22
SMC4-220ENST00000488017 SPRED3Q2MJR0 410 aa7.45□□□□□ -1.22
SMC4-220ENST00000488017 LCNL1Q6ZST4 164 aa7.45□□□□□ -1.22
SMC4-220ENST00000488017 POLR3DP05423 398 aaPredicted RBP7.44□□□□□ -1.22
SMC4-220ENST00000488017 ZSCAN18Q8TBC5 510 aaPredicted RBP7.44□□□□□ -1.22
SMC4-220ENST00000488017 NETO1Q8TDF5 533 aa7.44□□□□□ -1.22
SMC4-220ENST00000488017 VAV3Q9UKW4 847 aa7.44□□□□□ -1.22
SMC4-220ENST00000488017 MTMR7Q9Y216 660 aa7.44□□□□□ -1.22
SMC4-220ENST00000488017 BNIP3Q12983 259 aa7.43□□□□□ -1.22
SMC4-220ENST00000488017 AP3B2Q13367 1082 aa7.43□□□□□ -1.22
SMC4-220ENST00000488017 CCDC97Q96F63 343 aaPredicted RBP7.43□□□□□ -1.22
SMC4-220ENST00000488017 WDR18Q9BV38 432 aa7.43□□□□□ -1.22
SMC4-220ENST00000488017 RC3H2Q9HBD1 1191 aaKnown RBP7.43□□□□□ -1.22
SMC4-220ENST00000488017 SERPINA10Q9UK55 444 aa7.43□□□□□ -1.22
SMC4-220ENST00000488017 ECEL1O95672 775 aa7.42□□□□□ -1.22
SMC4-220ENST00000488017 RAP1GAPP47736 663 aa7.42□□□□□ -1.22
SMC4-220ENST00000488017 PRKCQQ04759 706 aa7.42□□□□□ -1.22
SMC4-220ENST00000488017 PDE3AQ14432 1141 aa7.42□□□□□ -1.22
SMC4-220ENST00000488017 KIAA0319Q5VV43 1072 aa7.42□□□□□ -1.22
SMC4-220ENST00000488017 TTLL10Q6ZVT0 673 aa7.42□□□□□ -1.22
SMC4-220ENST00000488017 ZNF576Q9H609 170 aa7.42□□□□□ -1.22
SMC4-220ENST00000488017 MKNK2Q9HBH9 465 aa7.42□□□□□ -1.22
SMC4-220ENST00000488017 RNASE1P07998 156 aaKnown RBP7.41□□□□□ -1.22
SMC4-220ENST00000488017 CD8BP10966 210 aa7.41□□□□□ -1.22
SMC4-220ENST00000488017 ITPKAP23677 461 aa7.41□□□□□ -1.22
SMC4-220ENST00000488017 FKBP4Q02790 459 aaKnown RBP eCLIP7.41□□□□□ -1.22
SMC4-220ENST00000488017 PLD6Q8N2A8 252 aaKnown RBP7.41□□□□□ -1.22
SMC4-220ENST00000488017 MBNL3Q9NUK0 354 aaKnown RBP7.41□□□□□ -1.22
SMC4-220ENST00000488017 CCDC87Q9NVE4 849 aa7.41□□□□□ -1.22
SMC4-220ENST00000488017 PPP1R9AQ9ULJ8 1098 aa7.41□□□□□ -1.22
SMC4-220ENST00000488017 TMPRSS2O15393 492 aa7.4□□□□□ -1.22
SMC4-220ENST00000488017 NEFLP07196 543 aa7.4□□□□□ -1.22
SMC4-220ENST00000488017 FAM87AP0C7U9 286 aa7.4□□□□□ -1.22
SMC4-220ENST00000488017 PTPN12Q05209 780 aaKnown RBP7.4□□□□□ -1.22
SMC4-220ENST00000488017 LRRC56Q8IYG6 542 aaPredicted RBP7.4□□□□□ -1.22
SMC4-220ENST00000488017 PI4K2BQ8TCG2 481 aa7.4□□□□□ -1.22
SMC4-220ENST00000488017 ATXN3LQ9H3M9 355 aa7.4□□□□□ -1.22
SMC4-220ENST00000488017 LGR6Q9HBX8 967 aa7.4□□□□□ -1.22
SMC4-220ENST00000488017 CRIM1Q9NZV1 1036 aa7.4□□□□□ -1.22
SMC4-220ENST00000488017 LRRC10BA6NIK2 292 aa7.39□□□□□ -1.23
SMC4-220ENST00000488017 TSPAN15O95858 294 aa7.39□□□□□ -1.23
SMC4-220ENST00000488017 IFI16Q16666 785 aaKnown RBP7.39□□□□□ -1.23
SMC4-220ENST00000488017 KRTAP9-8Q9BYQ0 159 aa7.39□□□□□ -1.23
SMC4-220ENST00000488017 PIDD1Q9HB75 910 aa7.39□□□□□ -1.23
SMC4-220ENST00000488017 LMCD1Q9NZU5 365 aa7.39□□□□□ -1.23
SMC4-220ENST00000488017 JAG2Q9Y219 1238 aa7.39□□□□□ -1.23
SMC4-220ENST00000488017 TMEM88BA6NKF7 163 aa7.38□□□□□ -1.23
SMC4-220ENST00000488017 SLFN14P0C7P3 912 aa7.38□□□□□ -1.23
SMC4-220ENST00000488017 ZSCAN22P10073 491 aaPredicted RBP7.38□□□□□ -1.23
SMC4-220ENST00000488017 HNRNPUQ00839 825 aaKnown RBP eCLIP7.38□□□□□ -1.23
SMC4-220ENST00000488017 CDK5R2Q13319 367 aa7.38□□□□□ -1.23
SMC4-220ENST00000488017 FAM181AQ8N9Y4 354 aa7.38□□□□□ -1.23
SMC4-220ENST00000488017 FAM53CQ9NYF3 392 aa7.38□□□□□ -1.23
SMC4-220ENST00000488017 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.38□□□□□ -1.23
SMC4-220ENST00000488017 ADAMTS6Q9UKP5 1117 aa7.38□□□□□ -1.23
SMC4-220ENST00000488017 ID3Q02535 119 aa7.37□□□□□ -1.23
SMC4-220ENST00000488017 RPS26P11Q5JNZ5 115 aaPredicted RBP7.37□□□□□ -1.23
SMC4-220ENST00000488017 LRRN4CLQ8ND94 238 aa7.37□□□□□ -1.23
SMC4-220ENST00000488017 HRASLS5Q96KN8 279 aa7.37□□□□□ -1.23
SMC4-220ENST00000488017 FANCD2OSQ96PS1 177 aa7.37□□□□□ -1.23
SMC4-220ENST00000488017 EHD4Q9H223 541 aa7.37□□□□□ -1.23
SMC4-220ENST00000488017 TMEM265A0A087WTH1 108 aa7.36□□□□□ -1.23
SMC4-220ENST00000488017 SMYD4Q8IYR2 804 aaPredicted RBP7.36□□□□□ -1.23
SMC4-220ENST00000488017 PPP1R16BQ96T49 567 aa7.36□□□□□ -1.23
SMC4-220ENST00000488017 CEACAM5P06731 702 aa7.35□□□□□ -1.23
SMC4-220ENST00000488017 LIG1P18858 919 aa7.35□□□□□ -1.23
SMC4-220ENST00000488017 AOC3Q16853 763 aa7.35□□□□□ -1.23
SMC4-220ENST00000488017 ANGEL2Q5VTE6 544 aaKnown RBP7.35□□□□□ -1.23
SMC4-220ENST00000488017 SLC23A3Q6PIS1 610 aa7.35□□□□□ -1.23
SMC4-220ENST00000488017 FLAD1Q8NFF5 587 aa7.35□□□□□ -1.23
SMC4-220ENST00000488017 CCDC86Q9H6F5 360 aaKnown RBP7.35□□□□□ -1.23
SMC4-220ENST00000488017 KRT82Q9NSB4 513 aa7.35□□□□□ -1.23
SMC4-220ENST00000488017 OXCT1P55809 520 aa7.34□□□□□ -1.23
SMC4-220ENST00000488017 KIF4BQ2VIQ3 1234 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms