RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 MAP2K3P46734 347 aa9.21□□□□□ -0.94
SMC4-217ENST00000485867 GDF10P55107 478 aa9.21□□□□□ -0.94
SMC4-217ENST00000485867 SEMA3FQ13275 785 aa9.21□□□□□ -0.94
SMC4-217ENST00000485867 TTLL6Q8N841 843 aa9.21□□□□□ -0.94
SMC4-217ENST00000485867 CARD11Q9BXL7 1154 aa9.21□□□□□ -0.94
SMC4-217ENST00000485867 TMEM88BA6NKF7 163 aa9.2□□□□□ -0.94
SMC4-217ENST00000485867 OIP5O43482 229 aa9.2□□□□□ -0.94
SMC4-217ENST00000485867 PRKCSHP14314 528 aaPredicted RBP9.2□□□□□ -0.94
SMC4-217ENST00000485867 LDHDQ86WU2 507 aa9.2□□□□□ -0.94
SMC4-217ENST00000485867 OXCT2Q9BYC2 517 aaPredicted RBP9.2□□□□□ -0.94
SMC4-217ENST00000485867 CRISPLD1Q9H336 500 aa9.2□□□□□ -0.94
SMC4-217ENST00000485867 PHF24Q9UPV7 400 aa9.2□□□□□ -0.94
SMC4-217ENST00000485867 COG6Q9Y2V7 657 aa9.2□□□□□ -0.94
SMC4-217ENST00000485867 CASP8AP2Q9UKL3 1982 aa9.2□□□□□ -0.94
SMC4-217ENST00000485867 CNTNAP5Q8WYK1 1306 aa9.2□□□□□ -0.94
SMC4-217ENST00000485867 ARFGEF2Q9Y6D5 1785 aa9.19□□□□□ -0.94
SMC4-217ENST00000485867 ERVV-2B6SEH9 535 aa9.19□□□□□ -0.94
SMC4-217ENST00000485867 PGBD3Q8N328 593 aa9.19□□□□□ -0.94
SMC4-217ENST00000485867 NEDD1Q8NHV4 660 aa9.19□□□□□ -0.94
SMC4-217ENST00000485867 NDFIP2Q9NV92 336 aa9.19□□□□□ -0.94
SMC4-217ENST00000485867 CARMIL3Q8ND23 1372 aa9.19□□□□□ -0.94
SMC4-217ENST00000485867 RASSF10A6NK89 507 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 PIK3CDO00329 1044 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 TNRC18O15417 2968 aaPredicted RBP9.18□□□□□ -0.94
SMC4-217ENST00000485867 DDNO94850 711 aaPredicted RBP9.18□□□□□ -0.94
SMC4-217ENST00000485867 PLA2G4AP47712 749 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 MAP2K1Q02750 393 aaPredicted RBP9.18□□□□□ -0.94
SMC4-217ENST00000485867 LTBP1Q14766 1721 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 NFIXQ14938 502 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 EFHC2Q5JST6 749 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 C2CD5Q86YS7 1000 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 SLX4Q8IY92 1834 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 ZNF295-AS1Q8N0V1 137 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 TESK2Q96S53 571 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 SIN3AQ96ST3 1273 aa9.18□□□□□ -0.94
SMC4-217ENST00000485867 TRPM7Q96QT4 1865 aa9.17□□□□□ -0.94
SMC4-217ENST00000485867 SCN11AQ9UI33 1791 aa9.17□□□□□ -0.94
SMC4-217ENST00000485867 WDR33Q9C0J8 1336 aaKnown RBP9.17□□□□□ -0.94
SMC4-217ENST00000485867 LTBP3Q9NS15 1303 aa9.17□□□□□ -0.94
SMC4-217ENST00000485867 TMEM229AB2RXF0 380 aa9.17□□□□□ -0.94
SMC4-217ENST00000485867 PTCD1O75127 700 aaKnown RBP9.17□□□□□ -0.94
SMC4-217ENST00000485867 ATP4AP20648 1035 aa9.17□□□□□ -0.94
SMC4-217ENST00000485867 SMTNP53814 917 aa9.17□□□□□ -0.94
SMC4-217ENST00000485867 USPL1Q5W0Q7 1092 aa9.17□□□□□ -0.94
SMC4-217ENST00000485867 INTS5Q6P9B9 1019 aaKnown RBP9.17□□□□□ -0.94
SMC4-217ENST00000485867 BEND7Q8N7W2 519 aaPredicted RBP9.17□□□□□ -0.94
SMC4-217ENST00000485867 TAF1DQ9H5J8 278 aaPredicted RBP9.17□□□□□ -0.94
SMC4-217ENST00000485867 ATXN7L1Q9ULK2 861 aaPredicted RBP9.17□□□□□ -0.94
SMC4-217ENST00000485867 SOS1Q07889 1333 aaPredicted RBP9.16□□□□□ -0.94
SMC4-217ENST00000485867 WASHC2AQ641Q2 1341 aa9.16□□□□□ -0.94
SMC4-217ENST00000485867 IQCA1LA6NCM1 817 aa9.16□□□□□ -0.94
SMC4-217ENST00000485867 PHF20L1A8MW92 1017 aa9.16□□□□□ -0.94
SMC4-217ENST00000485867 BNIP3LO60238 219 aa9.16□□□□□ -0.94
SMC4-217ENST00000485867 SERPINB2P05120 415 aa9.16□□□□□ -0.94
SMC4-217ENST00000485867 SUZ12Q15022 739 aaKnown RBP9.16□□□□□ -0.94
SMC4-217ENST00000485867 DEFB115Q30KQ5 88 aa9.16□□□□□ -0.94
SMC4-217ENST00000485867 GPAT2Q6NUI2 795 aa9.16□□□□□ -0.94
SMC4-217ENST00000485867 TBC1D9Q6ZT07 1266 aa9.16□□□□□ -0.94
SMC4-217ENST00000485867 ABHD17AQ96GS6 310 aa9.16□□□□□ -0.94
SMC4-217ENST00000485867 DNAAF2Q9NVR5 837 aaKnown RBP9.16□□□□□ -0.94
SMC4-217ENST00000485867 LOC100996750A0A140TA64 210 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 H0YIN7 160 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 C21orf2O43822 256 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 HSP90AB1P08238 724 aaKnown RBP9.15□□□□□ -0.94
SMC4-217ENST00000485867 CABP4P57796 275 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 FOXK2Q01167 660 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 MTFR1Q15390 333 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 C1orf229Q6ZS94 237 aaPredicted RBP9.15□□□□□ -0.94
SMC4-217ENST00000485867 PODNQ7Z5L7 613 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 C1orf216Q8TAB5 229 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 NIFKQ9BYG3 293 aaKnown RBP9.15□□□□□ -0.94
SMC4-217ENST00000485867 KRTAP4-6Q9BYQ5 205 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 ALG2Q9H553 416 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 IQSEC3Q9UPP2 1182 aaPredicted RBP9.15□□□□□ -0.94
SMC4-217ENST00000485867 PCDHGA11Q9Y5H2 935 aa9.15□□□□□ -0.94
SMC4-217ENST00000485867 COL15A1P39059 1388 aa9.14□□□□□ -0.95
SMC4-217ENST00000485867 SCN7AQ01118 1682 aa9.14□□□□□ -0.95
SMC4-217ENST00000485867 SHISA8B8ZZ34 492 aa9.14□□□□□ -0.95
SMC4-217ENST00000485867 C2CD2LO14523 706 aa9.14□□□□□ -0.95
SMC4-217ENST00000485867 PPM1GO15355 546 aaPredicted RBP9.14□□□□□ -0.95
SMC4-217ENST00000485867 IGHA1P01876 353 aa9.14□□□□□ -0.95
SMC4-217ENST00000485867 NEUROD1Q13562 356 aa9.14□□□□□ -0.95
SMC4-217ENST00000485867 EAPPQ56P03 285 aaPredicted RBP9.14□□□□□ -0.95
SMC4-217ENST00000485867 TAOK3Q9H2K8 898 aa9.14□□□□□ -0.95
SMC4-217ENST00000485867 NARFQ9UHQ1 456 aa9.14□□□□□ -0.95
SMC4-217ENST00000485867 SERTAD1Q9UHV2 236 aa9.14□□□□□ -0.95
SMC4-217ENST00000485867 GDF2Q9UK05 429 aaPredicted RBP9.14□□□□□ -0.95
SMC4-217ENST00000485867 FGFR3P22607 806 aa9.13□□□□□ -0.95
SMC4-217ENST00000485867 ZNF622Q969S3 477 aaKnown RBP eCLIP9.13□□□□□ -0.95
SMC4-217ENST00000485867 POM121Q96HA1 1249 aa9.13□□□□□ -0.95
SMC4-217ENST00000485867 MCOLN1Q9GZU1 580 aa9.13□□□□□ -0.95
SMC4-217ENST00000485867 ABT1Q9ULW3 272 aaKnown RBP9.13□□□□□ -0.95
SMC4-217ENST00000485867 USP3Q9Y6I4 520 aa9.13□□□□□ -0.95
SMC4-217ENST00000485867 ST20-MTHFSA0A0A6YYL1 179 aa9.12□□□□□ -0.95
SMC4-217ENST00000485867 A6NJY4 79 aa9.12□□□□□ -0.95
SMC4-217ENST00000485867 SNRPNP63162 240 aaKnown RBP9.12□□□□□ -0.95
SMC4-217ENST00000485867 CTBSQ01459 385 aa9.12□□□□□ -0.95
SMC4-217ENST00000485867 EIF4A2Q14240 407 aaKnown RBP9.12□□□□□ -0.95
SMC4-217ENST00000485867 ZNF530Q6P9A1 599 aaPredicted RBP9.12□□□□□ -0.95
SMC4-217ENST00000485867 FIGNL1Q6PIW4 674 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms