RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 FBLN7Q53RD9 439 aa6.23□□□□□ -1.41
VPS50-216ENST00000484954 SGO2Q562F6 1265 aa6.23□□□□□ -1.41
VPS50-216ENST00000484954 NUTM2GQ5VZR2 741 aa6.23□□□□□ -1.41
VPS50-216ENST00000484954 C12orf50Q8NA57 414 aaPredicted RBP6.23□□□□□ -1.41
VPS50-216ENST00000484954 SMG8Q8ND04 991 aaKnown RBP6.23□□□□□ -1.41
VPS50-216ENST00000484954 GIMAP7Q8NHV1 300 aa6.23□□□□□ -1.41
VPS50-216ENST00000484954 FBXL18Q96ME1 805 aa6.23□□□□□ -1.41
VPS50-216ENST00000484954 SUGCTQ9HAC7 445 aa6.23□□□□□ -1.41
VPS50-216ENST00000484954 WWC3Q9ULE0 1092 aa6.23□□□□□ -1.41
VPS50-216ENST00000484954 FOSL1P15407 271 aa6.22□□□□□ -1.41
VPS50-216ENST00000484954 JUNBP17275 347 aaPredicted RBP6.22□□□□□ -1.41
VPS50-216ENST00000484954 MAP4P27816 1152 aaKnown RBP6.22□□□□□ -1.41
VPS50-216ENST00000484954 FCGRTP55899 365 aa6.22□□□□□ -1.41
VPS50-216ENST00000484954 PLCB3Q01970 1234 aa6.22□□□□□ -1.41
VPS50-216ENST00000484954 POU4F3Q15319 338 aa6.22□□□□□ -1.41
VPS50-216ENST00000484954 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS50-216ENST00000484954 VSIG10LQ86VR7 867 aa6.22□□□□□ -1.41
VPS50-216ENST00000484954 BCO2Q9BYV7 579 aa6.22□□□□□ -1.41
VPS50-216ENST00000484954 FMR1Q06787 632 aaKnown RBP eCLIP6.21□□□□□ -1.42
VPS50-216ENST00000484954 EXOSC6Q5RKV6 272 aaKnown RBP6.21□□□□□ -1.42
VPS50-216ENST00000484954 NXPE4Q6UWF7 544 aa6.21□□□□□ -1.42
VPS50-216ENST00000484954 C2CD4AQ8NCU7 369 aaPredicted RBP6.21□□□□□ -1.42
VPS50-216ENST00000484954 MAPK8P45983 427 aa6.2□□□□□ -1.42
VPS50-216ENST00000484954 PTPN12Q05209 780 aaKnown RBP6.2□□□□□ -1.42
VPS50-216ENST00000484954 CDPF1Q6NVV7 123 aa6.2□□□□□ -1.42
VPS50-216ENST00000484954 SPOCD1Q6ZMY3 1216 aa6.2□□□□□ -1.42
VPS50-216ENST00000484954 FLCNQ8NFG4 579 aa6.2□□□□□ -1.42
VPS50-216ENST00000484954 ASB16Q96NS5 453 aa6.2□□□□□ -1.42
VPS50-216ENST00000484954 CYP4F12Q9HCS2 524 aa6.2□□□□□ -1.42
VPS50-216ENST00000484954 TRAK1Q9UPV9 953 aa6.2□□□□□ -1.42
VPS50-216ENST00000484954 HIF3AQ9Y2N7 669 aa6.2□□□□□ -1.42
VPS50-216ENST00000484954 PRNPP04156 253 aa6.19□□□□□ -1.42
VPS50-216ENST00000484954 CYP11A1P05108 521 aa6.19□□□□□ -1.42
VPS50-216ENST00000484954 ADH5P11766 374 aa6.19□□□□□ -1.42
VPS50-216ENST00000484954 SOX4Q06945 474 aaPredicted RBP6.19□□□□□ -1.42
VPS50-216ENST00000484954 DTHD1Q6ZMT9 781 aa6.19□□□□□ -1.42
VPS50-216ENST00000484954 STK35Q8TDR2 534 aa6.19□□□□□ -1.42
VPS50-216ENST00000484954 FBLIM1Q8WUP2 373 aa6.19□□□□□ -1.42
VPS50-216ENST00000484954 ZC3H12CQ9C0D7 883 aaKnown RBP6.19□□□□□ -1.42
VPS50-216ENST00000484954 NLRP2Q9NX02 1062 aa6.19□□□□□ -1.42
VPS50-216ENST00000484954 ACTL7BQ9Y614 415 aa6.19□□□□□ -1.42
VPS50-216ENST00000484954 DBX1A6NMT0 343 aa6.18□□□□□ -1.42
VPS50-216ENST00000484954 CYP26A1O43174 497 aa6.18□□□□□ -1.42
VPS50-216ENST00000484954 P4HBP07237 508 aaKnown RBP6.18□□□□□ -1.42
VPS50-216ENST00000484954 NFKBIBQ15653 356 aa6.18□□□□□ -1.42
VPS50-216ENST00000484954 RPS26P11Q5JNZ5 115 aaPredicted RBP6.18□□□□□ -1.42
VPS50-216ENST00000484954 AKAP4Q5JQC9 854 aa6.18□□□□□ -1.42
VPS50-216ENST00000484954 C3orf58Q8NDZ4 430 aa6.18□□□□□ -1.42
VPS50-216ENST00000484954 WDR89Q96FK6 387 aaPredicted RBP6.18□□□□□ -1.42
VPS50-216ENST00000484954 CORO1BQ9BR76 489 aa6.18□□□□□ -1.42
VPS50-216ENST00000484954 OSBPL7Q9BZF2 842 aa6.18□□□□□ -1.42
VPS50-216ENST00000484954 CCDC86Q9H6F5 360 aaKnown RBP6.18□□□□□ -1.42
VPS50-216ENST00000484954 PAPLNO95428 1278 aa6.17□□□□□ -1.42
VPS50-216ENST00000484954 AEBP1Q8IUX7 1158 aa6.17□□□□□ -1.42
VPS50-216ENST00000484954 ZSCAN29Q8IWY8 852 aaPredicted RBP6.17□□□□□ -1.42
VPS50-216ENST00000484954 WDR18Q9BV38 432 aa6.17□□□□□ -1.42
VPS50-216ENST00000484954 BSDC1Q9NW68 430 aaPredicted RBP6.17□□□□□ -1.42
VPS50-216ENST00000484954 PPP1R9AQ9ULJ8 1098 aa6.17□□□□□ -1.42
VPS50-216ENST00000484954 AKAP2Q9Y2D5 859 aa6.17□□□□□ -1.42
VPS50-216ENST00000484954 AOC2O75106 756 aa6.16□□□□□ -1.42
VPS50-216ENST00000484954 LIG1P18858 919 aa6.16□□□□□ -1.42
VPS50-216ENST00000484954 PDE3AQ14432 1141 aa6.16□□□□□ -1.42
VPS50-216ENST00000484954 PDZD3Q86UT5 571 aa6.16□□□□□ -1.42
VPS50-216ENST00000484954 PAK6Q9NQU5 681 aaPredicted RBP6.16□□□□□ -1.42
VPS50-216ENST00000484954 FAM105AQ9NUU6 356 aa6.16□□□□□ -1.42
VPS50-216ENST00000484954 RNF19AQ9NV58 838 aa6.16□□□□□ -1.42
VPS50-216ENST00000484954 GPN3Q9UHW5 284 aaPredicted RBP6.16□□□□□ -1.42
VPS50-216ENST00000484954 AP4E1Q9UPM8 1137 aa6.16□□□□□ -1.42
VPS50-216ENST00000484954 FAM95CA0A1B0GW59 222 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 ZNF862O60290 1169 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 FBXO24O75426 580 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 RAB6AP20340 208 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 ADMP35318 185 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 USP11P51784 963 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 AP3B2Q13367 1082 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 DYMQ7RTS9 669 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 AGBL5Q8NDL9 886 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 RAD18Q9NS91 495 aa6.15□□□□□ -1.42
VPS50-216ENST00000484954 DYNC1LI2O43237 492 aaPredicted RBP6.14□□□□□ -1.43
VPS50-216ENST00000484954 NFICP08651 508 aa6.14□□□□□ -1.43
VPS50-216ENST00000484954 GSTP1P09211 210 aaKnown RBP6.14□□□□□ -1.43
VPS50-216ENST00000484954 PAOXQ6QHF9 649 aa6.14□□□□□ -1.43
VPS50-216ENST00000484954 MPRIPQ6WCQ1 1025 aa6.14□□□□□ -1.43
VPS50-216ENST00000484954 DDX54Q8TDD1 881 aaKnown RBP6.14□□□□□ -1.43
VPS50-216ENST00000484954 EZH1Q92800 747 aaPredicted RBP6.14□□□□□ -1.43
VPS50-216ENST00000484954 TBC1D32Q96NH3 1257 aa6.14□□□□□ -1.43
VPS50-216ENST00000484954 TMEM39AQ9NV64 488 aa6.14□□□□□ -1.43
VPS50-216ENST00000484954 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.14□□□□□ -1.43
VPS50-216ENST00000484954 FAM170BA6NMN3 283 aa6.13□□□□□ -1.43
VPS50-216ENST00000484954 TMPRSS2O15393 492 aa6.13□□□□□ -1.43
VPS50-216ENST00000484954 EIF4EBP3O60516 100 aaPredicted RBP6.13□□□□□ -1.43
VPS50-216ENST00000484954 PAGE1O75459 146 aa6.13□□□□□ -1.43
VPS50-216ENST00000484954 RASIP1Q5U651 963 aa6.13□□□□□ -1.43
VPS50-216ENST00000484954 TPTE2Q6XPS3 522 aa6.13□□□□□ -1.43
VPS50-216ENST00000484954 SND1Q7KZF4 910 aaKnown RBP eCLIP6.13□□□□□ -1.43
VPS50-216ENST00000484954 SULF2Q8IWU5 870 aa6.13□□□□□ -1.43
VPS50-216ENST00000484954 FBF1Q8TES7 1133 aa6.13□□□□□ -1.43
VPS50-216ENST00000484954 GATA6Q92908 595 aa6.13□□□□□ -1.43
VPS50-216ENST00000484954 METTL22Q9BUU2 404 aaPredicted RBP6.13□□□□□ -1.43
VPS50-216ENST00000484954 SEMA6CQ9H3T2 930 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms