RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 IL25Q9H293 177 aa12.14□□□□□ -0.47
USP39-215ENST00000481409 MBD4O95243 580 aa12.13□□□□□ -0.47
USP39-215ENST00000481409 OGFOD1Q8N543 542 aa12.13□□□□□ -0.47
USP39-215ENST00000481409 CERS5Q8N5B7 392 aa12.13□□□□□ -0.47
USP39-215ENST00000481409 ZNF384Q8TF68 577 aa12.13□□□□□ -0.47
USP39-215ENST00000481409 FBXW7Q969H0 707 aa12.13□□□□□ -0.47
USP39-215ENST00000481409 ZDHHC15Q96MV8 337 aa12.13□□□□□ -0.47
USP39-215ENST00000481409 TTF2Q9UNY4 1162 aaKnown RBP12.13□□□□□ -0.47
USP39-215ENST00000481409 RBM8AQ9Y5S9 174 aaKnown RBP12.13□□□□□ -0.47
USP39-215ENST00000481409 SBF1O95248 1867 aa12.12□□□□□ -0.47
USP39-215ENST00000481409 HMGB1P09429 215 aaKnown RBP12.12□□□□□ -0.47
USP39-215ENST00000481409 PCP11498 1178 aaKnown RBP12.12□□□□□ -0.47
USP39-215ENST00000481409 PSMA5P28066 241 aa12.12□□□□□ -0.47
USP39-215ENST00000481409 ANP32AP39687 249 aaKnown RBP12.12□□□□□ -0.47
USP39-215ENST00000481409 PTH1RQ03431 593 aa12.12□□□□□ -0.47
USP39-215ENST00000481409 RABEP1Q15276 862 aa12.12□□□□□ -0.47
USP39-215ENST00000481409 IMMTQ16891 758 aaKnown RBP12.12□□□□□ -0.47
USP39-215ENST00000481409 DPF2Q92785 391 aa12.12□□□□□ -0.47
USP39-215ENST00000481409 GMLQ99445 158 aa12.12□□□□□ -0.47
USP39-215ENST00000481409 TM6SF1Q9BZW5 370 aa12.12□□□□□ -0.47
USP39-215ENST00000481409 RBM19Q9Y4C8 960 aaKnown RBP12.12□□□□□ -0.47
USP39-215ENST00000481409 SLC4A4Q9Y6R1 1079 aa12.12□□□□□ -0.47
USP39-215ENST00000481409 PSMD14O00487 310 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 CXCL9Q07325 125 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 CREB3L3Q68CJ9 461 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 CCDC129Q6ZRS4 1044 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 ADGRA1Q86SQ6 560 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 AMOTL1Q8IY63 956 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 IFNL3Q8IZI9 196 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 LCORLQ8N3X6 602 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 MTMR14Q8NCE2 650 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 NAPBQ9H115 298 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 JAG2Q9Y219 1238 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 DAGLAQ9Y4D2 1042 aa12.11□□□□□ -0.47
USP39-215ENST00000481409 COL4A5P29400 1685 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 GSG1L2A8MUP6 293 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 ZNF213O14771 459 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 SLC27A2O14975 620 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 FGAP02671 866 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 CHGBP05060 677 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 APPP05067 770 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 BTDP43251 543 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 CRKP46108 304 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 RASSF7Q02833 373 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 SBK1Q52WX2 424 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 MIGA1Q8NAN2 632 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 ARMT1Q9H993 441 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 KCNQ5Q9NR82 932 aa12.1□□□□□ -0.47
USP39-215ENST00000481409 AATFQ9NY61 560 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP39-215ENST00000481409 ARPP21Q9UBL0 812 aaPredicted RBP12.1□□□□□ -0.47
USP39-215ENST00000481409 LAMA4Q16363 1823 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 RAD17O75943 681 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 USP17L8P0C7I0 530 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 YBX3P16989 372 aaKnown RBP eCLIP12.09□□□□□ -0.472e-8■□□□□ 8.8
USP39-215ENST00000481409 TDO2P48775 406 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 MCM2P49736 904 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 DIXDC1Q155Q3 683 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 GRIK5Q16478 980 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 GPR162Q16538 588 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 SLFNL1Q499Z3 407 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 VPS53Q5VIR6 699 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 KIAA0825Q8IV33 1275 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 GPC2Q8N158 579 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 RNF41Q9H4P4 317 aaPredicted RBP12.09□□□□□ -0.47
USP39-215ENST00000481409 ANAPC4Q9UJX5 808 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 FOCADQ5VW36 1801 aa12.09□□□□□ -0.47
USP39-215ENST00000481409 FOXP2O15409 715 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 ST18O60284 1047 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 SLC3A2P08195 630 aaKnown RBP12.08□□□□□ -0.48
USP39-215ENST00000481409 CYP21A2P08686 494 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 USP5P45974 858 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 RHBDL3P58872 404 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 ZNF280AP59817 542 aaPredicted RBP12.08□□□□□ -0.48
USP39-215ENST00000481409 FKBP1CQ5VVH2 108 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 APOBEC3HQ6NTF7 200 aaKnown RBP12.08□□□□□ -0.48
USP39-215ENST00000481409 SNX21Q969T3 373 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 MTA3Q9BTC8 594 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 IDI2Q9BXS1 227 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 CNNM2Q9H8M5 875 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 ZNF287Q9HBT7 754 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 DCP1AQ9NPI6 582 aaPredicted RBP12.08□□□□□ -0.48
USP39-215ENST00000481409 MKRN1Q9UHC7 482 aaKnown RBP12.08□□□□□ -0.48
USP39-215ENST00000481409 SNX14Q9Y5W7 946 aa12.08□□□□□ -0.48
USP39-215ENST00000481409 MYO1BO43795 1136 aa12.07□□□□□ -0.48
USP39-215ENST00000481409 DYNLL1P63167 89 aaKnown RBP12.07□□□□□ -0.48
USP39-215ENST00000481409 TRDNQ13061 729 aa12.07□□□□□ -0.48
USP39-215ENST00000481409 BECN1Q14457 450 aa12.07□□□□□ -0.48
USP39-215ENST00000481409 DLGAP5Q15398 846 aa12.07□□□□□ -0.48
USP39-215ENST00000481409 TEX11Q8IYF3 940 aa12.07□□□□□ -0.48
USP39-215ENST00000481409 KIF2CQ99661 725 aa12.07□□□□□ -0.48
USP39-215ENST00000481409 ALDH8A1Q9H2A2 487 aaPredicted RBP12.07□□□□□ -0.48
USP39-215ENST00000481409 TMOD2Q9NZR1 351 aa12.07□□□□□ -0.48
USP39-215ENST00000481409 COL2A1P02458 1487 aaPredicted RBP12.07□□□□□ -0.48
USP39-215ENST00000481409 WDR19Q8NEZ3 1342 aa12.07□□□□□ -0.48
USP39-215ENST00000481409 ECM29Q5VYK3 1845 aa12.07□□□□□ -0.48
USP39-215ENST00000481409 TIAM2Q8IVF5 1701 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 F8W031 263 aaPredicted RBP12.06□□□□□ -0.48
USP39-215ENST00000481409 ENTPD3O75355 529 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 SCNN1DP51172 638 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 PRELPP51888 382 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms