RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 WRNIP1Q96S55 665 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 CD209Q9NNX6 404 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 TAOK2Q9UL54 1235 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 JAG2Q9Y219 1238 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 FRMPD3Q5JV73 1810 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 BRWD1Q9NSI6 2320 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 PTPRFP10586 1907 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 TNPO2O14787 897 aaKnown RBP6.35□□□□□ -1.39
USP4-209ENST00000475873 HMGCRP04035 888 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 U2AF1L5P0DN76 240 aaPredicted RBP6.35□□□□□ -1.39
USP4-209ENST00000475873 KCNQ1P51787 676 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 EPHB4P54760 987 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 U2AF1Q01081 240 aaKnown RBP eCLIP6.35□□□□□ -1.39
USP4-209ENST00000475873 NHLH1Q02575 133 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 TFF2Q03403 129 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 TRIM28Q13263 835 aaKnown RBP6.35□□□□□ -1.39
USP4-209ENST00000475873 LHX8Q68G74 356 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 ANKRD18AQ8IVF6 992 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 PLBD2Q8NHP8 589 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 TRIB2Q92519 343 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 HMX1Q9NP08 348 aaPredicted RBP6.35□□□□□ -1.39
USP4-209ENST00000475873 GJD2Q9UKL4 321 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 DAGLAQ9Y4D2 1042 aa6.35□□□□□ -1.39
USP4-209ENST00000475873 ZFHX4Q86UP3 3567 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 MYO1BO43795 1136 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 GPR37L1O60883 481 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 DNAJB2P25686 324 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 ITGB8P26012 769 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 CACNB3P54284 484 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 PPATQ06203 517 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 CCDC85BQ15834 202 aaPredicted RBP6.34□□□□□ -1.39
USP4-209ENST00000475873 GRIK5Q16478 980 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 CCDC152Q4G0S7 254 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 PNISRQ8TF01 805 aaKnown RBP6.34□□□□□ -1.39
USP4-209ENST00000475873 PHOX2BQ99453 314 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 PARK7Q99497 189 aaKnown RBP6.34□□□□□ -1.39
USP4-209ENST00000475873 LBHD1Q9BQE6 289 aaPredicted RBP6.34□□□□□ -1.39
USP4-209ENST00000475873 BSDC1Q9NW68 430 aaPredicted RBP6.34□□□□□ -1.39
USP4-209ENST00000475873 CHPF2Q9P2E5 772 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 EPG5Q9HCE0 2579 aa6.34□□□□□ -1.39
USP4-209ENST00000475873 A0A1B0GUL6 1792 aa6.34□□□□□ -1.4
USP4-209ENST00000475873 PRRC2BQ5JSZ5 2229 aaKnown RBP6.33□□□□□ -1.4
USP4-209ENST00000475873 RLFQ13129 1914 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 PDE8AO60658 829 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 ATN1P54259 1190 aaPredicted RBP6.33□□□□□ -1.4
USP4-209ENST00000475873 TNFAIP1Q13829 316 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 PDE3AQ14432 1141 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 AKNAD1Q5T1N1 836 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 SH3RF1Q7Z6J0 888 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 DZIP1LQ8IYY4 767 aaKnown RBP6.33□□□□□ -1.4
USP4-209ENST00000475873 BADQ92934 168 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 PRDM12Q9H4Q4 367 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 ZNF576Q9H609 170 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 GREM2Q9H772 168 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 CD320Q9NPF0 282 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 LEMD3Q9Y2U8 911 aa6.33□□□□□ -1.4
USP4-209ENST00000475873 PCCAP05165 728 aaPredicted RBP6.32□□□□□ -1.4
USP4-209ENST00000475873 HSPA5P11021 654 aaKnown RBP6.32□□□□□ -1.4
USP4-209ENST00000475873 PRKAR2AP13861 404 aaKnown RBP6.32□□□□□ -1.4
USP4-209ENST00000475873 CCND3P30281 292 aaPredicted RBP6.32□□□□□ -1.4
USP4-209ENST00000475873 RBM5P52756 815 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP4-209ENST00000475873 CTSWP56202 376 aa6.32□□□□□ -1.4
USP4-209ENST00000475873 RTP1P59025 263 aa6.32□□□□□ -1.4
USP4-209ENST00000475873 MIGA2Q7L4E1 593 aa6.32□□□□□ -1.4
USP4-209ENST00000475873 RIC3Q7Z5B4 369 aa6.32□□□□□ -1.4
USP4-209ENST00000475873 ANKRD13CQ8N6S4 541 aa6.32□□□□□ -1.4
USP4-209ENST00000475873 TTLL11Q8NHH1 800 aa6.32□□□□□ -1.4
USP4-209ENST00000475873 ANKS1AQ92625 1134 aa6.32□□□□□ -1.4
USP4-209ENST00000475873 CXXC1Q9P0U4 656 aaPredicted RBP6.32□□□□□ -1.4
USP4-209ENST00000475873 PTPRZ1P23471 2315 aaPredicted RBP6.32□□□□□ -1.4
USP4-209ENST00000475873 PLXNA1Q9UIW2 1896 aa6.32□□□□□ -1.4
USP4-209ENST00000475873 PHIPQ8WWQ0 1821 aa6.32□□□□□ -1.4
USP4-209ENST00000475873 BAHCC1Q9P281 2608 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 CACNA1HO95180 2353 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 LRRC37A2A6NM11 1700 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 MYH3P11055 1940 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 PKD1L2Q7Z442 2459 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 TRIM43BA6NCK2 446 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 SMIM22K7EJ46 135 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 PEX10O60683 326 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 IL1R1P14778 569 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 PBX2P40425 430 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 FKBP1AP62942 108 aaKnown RBP6.31□□□□□ -1.4
USP4-209ENST00000475873 CACNB2Q08289 660 aaPredicted RBP6.31□□□□□ -1.4
USP4-209ENST00000475873 TRIM43Q96BQ3 446 aaPredicted RBP6.31□□□□□ -1.4
USP4-209ENST00000475873 FBXL18Q96ME1 805 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 SENP6Q9GZR1 1112 aaPredicted RBP6.31□□□□□ -1.4
USP4-209ENST00000475873 PDLIM7Q9NR12 457 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 TSPYL4Q9UJ04 414 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 ZNF112Q9UJU3 913 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 TRANK1O15050 2925 aa6.31□□□□□ -1.4
USP4-209ENST00000475873 TPRP12270 2363 aaKnown RBP6.3□□□□□ -1.4
USP4-209ENST00000475873 TRIOO75962 3097 aa6.3□□□□□ -1.4
USP4-209ENST00000475873 A0A0G2JLL6 359 aaPredicted RBP6.3□□□□□ -1.4
USP4-209ENST00000475873 SLURP2P0DP57 97 aa6.3□□□□□ -1.4
USP4-209ENST00000475873 CNGB1Q14028 1251 aaPredicted RBP6.3□□□□□ -1.4
USP4-209ENST00000475873 CCL14Q16627 93 aa6.3□□□□□ -1.4
USP4-209ENST00000475873 C15orf52Q6ZUT6 534 aaKnown RBP6.3□□□□□ -1.4
USP4-209ENST00000475873 PRRT2Q7Z6L0 340 aaPredicted RBP6.3□□□□□ -1.4
USP4-209ENST00000475873 COA7Q96BR5 231 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms