RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 PPP4CP60510 307 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 DYNLL1P63167 89 aaKnown RBP12.76□□□□□ -0.37
SMC1A-206ENST00000470241 ANGEL2Q5VTE6 544 aaKnown RBP12.76□□□□□ -0.37
SMC1A-206ENST00000470241 CDC42EP5Q6NZY7 148 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 LDHDQ86WU2 507 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 MIGA1Q8NAN2 632 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 AATFQ9NY61 560 aaKnown RBP eCLIP12.76□□□□□ -0.37
SMC1A-206ENST00000470241 GGA3Q9NZ52 723 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 ZNF70Q9UC06 446 aaPredicted RBP12.76□□□□□ -0.37
SMC1A-206ENST00000470241 CLEC11AQ9Y240 323 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 MAST2Q6P0Q8 1798 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 DOCK2Q92608 1830 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 MYO1BO43795 1136 aa12.75□□□□□ -0.37
SMC1A-206ENST00000470241 ZFYP08048 801 aaPredicted RBP12.75□□□□□ -0.37
SMC1A-206ENST00000470241 RFX7Q2KHR2 1363 aa12.75□□□□□ -0.37
SMC1A-206ENST00000470241 LRRFIP1Q32MZ4 808 aaKnown RBP12.75□□□□□ -0.37
SMC1A-206ENST00000470241 BMP2KLQ5H9B9 411 aa12.75□□□□□ -0.37
SMC1A-206ENST00000470241 ZMYM1Q5SVZ6 1142 aa12.75□□□□□ -0.37
SMC1A-206ENST00000470241 TICAM2Q86XR7 235 aa12.75□□□□□ -0.37
SMC1A-206ENST00000470241 APPBP2Q92624 585 aa12.75□□□□□ -0.37
SMC1A-206ENST00000470241 OSBP2Q969R2 916 aa12.75□□□□□ -0.37
SMC1A-206ENST00000470241 RIOK1Q9BRS2 568 aaKnown RBP12.75□□□□□ -0.37
SMC1A-206ENST00000470241 PUS7LQ9H0K6 701 aaKnown RBP12.75□□□□□ -0.37
SMC1A-206ENST00000470241 USP40Q9NVE5 1235 aa12.75□□□□□ -0.37
SMC1A-206ENST00000470241 PITPNM2Q9BZ72 1349 aa12.74□□□□□ -0.37
SMC1A-206ENST00000470241 BAG3O95817 575 aa12.74□□□□□ -0.37
SMC1A-206ENST00000470241 CACNB3P54284 484 aa12.74□□□□□ -0.37
SMC1A-206ENST00000470241 MAP1SQ66K74 1059 aaPredicted RBP12.74□□□□□ -0.37
SMC1A-206ENST00000470241 LCORLQ8N3X6 602 aa12.74□□□□□ -0.37
SMC1A-206ENST00000470241 SH3RF3Q8TEJ3 882 aaPredicted RBP12.74□□□□□ -0.37
SMC1A-206ENST00000470241 SEC62Q99442 399 aaKnown RBP12.74□□□□□ -0.37
SMC1A-206ENST00000470241 VEZTQ9HBM0 779 aa12.74□□□□□ -0.37
SMC1A-206ENST00000470241 SCAF8Q9UPN6 1271 aaKnown RBP12.74□□□□□ -0.37
SMC1A-206ENST00000470241 MAGEB6P1A0A0J9YX57 407 aa12.73□□□□□ -0.37
SMC1A-206ENST00000470241 M0R2C6 588 aa12.73□□□□□ -0.37
SMC1A-206ENST00000470241 WDHD1O75717 1129 aaPredicted RBP12.73□□□□□ -0.37
SMC1A-206ENST00000470241 MBD4O95243 580 aa12.73□□□□□ -0.37
SMC1A-206ENST00000470241 NFIAQ12857 509 aa12.73□□□□□ -0.37
SMC1A-206ENST00000470241 NMIQ13287 307 aaPredicted RBP12.73□□□□□ -0.37
SMC1A-206ENST00000470241 CHADLQ6NUI6 762 aa12.73□□□□□ -0.37
SMC1A-206ENST00000470241 DCPSQ96C86 337 aaKnown RBP12.73□□□□□ -0.37
SMC1A-206ENST00000470241 FAM227BQ96M60 508 aa12.73□□□□□ -0.37
SMC1A-206ENST00000470241 NOL10Q9BSC4 688 aaKnown RBP12.73□□□□□ -0.37
SMC1A-206ENST00000470241 ARMT1Q9H993 441 aa12.73□□□□□ -0.37
SMC1A-206ENST00000470241 MYO5AQ9Y4I1 1855 aaKnown RBP12.73□□□□□ -0.37
SMC1A-206ENST00000470241 CNTNAP1P78357 1384 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 A0A0D9SFI3 127 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 TCP10L2B9ZVM9 353 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 ADM5C9JUS6 153 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 TOMM70O94826 608 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 PLCG2P16885 1265 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 FKBP1CQ5VVH2 108 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 DLK2Q6UY11 383 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 USP48Q86UV5 1035 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 APOBEC3FQ8IUX4 373 aaKnown RBP12.72□□□□□ -0.37
SMC1A-206ENST00000470241 TEX11Q8IYF3 940 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 RBM46Q8TBY0 533 aaKnown RBP12.72□□□□□ -0.37
SMC1A-206ENST00000470241 IDI2Q9BXS1 227 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 GLIS2Q9BZE0 524 aaPredicted RBP12.72□□□□□ -0.37
SMC1A-206ENST00000470241 TMOD2Q9NZR1 351 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 FAM198AQ9UFP1 575 aa12.72□□□□□ -0.37
SMC1A-206ENST00000470241 GPAA1O43292 621 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 CHMLP26374 656 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 RASA3Q14644 834 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 CDC37L1Q7L3B6 337 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 KRT26Q7Z3Y9 468 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 CERS3Q8IU89 383 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 SULF1Q8IWU6 871 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 ZFPM1Q8IX07 1006 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 AIDAQ96BJ3 306 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 STRBPQ96SI9 672 aaKnown RBP12.71□□□□□ -0.37
SMC1A-206ENST00000470241 DEFB129Q9H1M3 183 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 DDX4Q9NQI0 724 aaKnown RBP12.71□□□□□ -0.37
SMC1A-206ENST00000470241 HELLSQ9NRZ9 838 aa12.71□□□□□ -0.37
SMC1A-206ENST00000470241 MYH2Q9UKX2 1941 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 HIP1O00291 1037 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 PRKAB2O43741 272 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 ENTPD3O75355 529 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 NPM3O75607 178 aaKnown RBP12.7□□□□□ -0.38
SMC1A-206ENST00000470241 ITGBL1O95965 494 aaPredicted RBP12.7□□□□□ -0.38
SMC1A-206ENST00000470241 TCP10Q12799 353 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 PICALMQ13492 652 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 TNFAIP1Q13829 316 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 MCMDC2Q4G0Z9 681 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 CWC27Q6UX04 472 aaKnown RBP12.7□□□□□ -0.38
SMC1A-206ENST00000470241 CCDC129Q6ZRS4 1044 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 FAM83AQ86UY5 434 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 CDAN1Q8IWY9 1227 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 SMC1BQ8NDV3 1235 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 TGFBRAP1Q8WUH2 860 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 DIAPH3Q9NSV4 1193 aa12.7□□□□□ -0.38
SMC1A-206ENST00000470241 TRAF5O00463 557 aa12.69□□□□□ -0.38
SMC1A-206ENST00000470241 TNNI2P48788 182 aa12.69□□□□□ -0.38
SMC1A-206ENST00000470241 FMR1Q06787 632 aaKnown RBP eCLIP12.69□□□□□ -0.382e-6■□□□□ 9.6
SMC1A-206ENST00000470241 PRAMEF18Q5VWM3 479 aa12.69□□□□□ -0.38
SMC1A-206ENST00000470241 SH3BP5LQ7L8J4 393 aa12.69□□□□□ -0.38
SMC1A-206ENST00000470241 ZNF589Q86UQ0 364 aaPredicted RBP12.69□□□□□ -0.38
SMC1A-206ENST00000470241 MAPKAPK5Q8IW41 473 aa12.69□□□□□ -0.38
SMC1A-206ENST00000470241 SDR42E1Q8WUS8 393 aa12.69□□□□□ -0.38
SMC1A-206ENST00000470241 FAM151AQ8WW52 585 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms