RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 ZNF772Q68DY9 489 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-208ENST00000468792 CPLX2Q6PUV4 134 aaKnown RBP8.93□□□□□ -0.98
COL6A3-208ENST00000468792 BICDL1Q6ZP65 573 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 AMIGO3Q86WK7 504 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 VPS37DQ86XT2 251 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 TBC1D10CQ8IV04 446 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 CNBD1Q8NA66 436 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 FOXD4L4Q8WXT5 416 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-208ENST00000468792 RIOK1Q9BRS2 568 aaKnown RBP8.93□□□□□ -0.98
COL6A3-208ENST00000468792 LRRC2Q9BYS8 371 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 EPB41L4AQ9HCS5 686 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-208ENST00000468792 DUOX1Q9NRD9 1551 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 CACNA1SQ13698 1873 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 KIAA1551Q9HCM1 1747 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 COL1A1P02452 1464 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-208ENST00000468792 XDHP47989 1333 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 STK36Q9NRP7 1315 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 MAGEB6P1A0A0J9YX57 407 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 KLF18A0A0U1RQI7 1052 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 GADD45BO75293 160 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-208ENST00000468792 FDPSP14324 419 aaKnown RBP8.92□□□□□ -0.98
COL6A3-208ENST00000468792 CYP7A1P22680 504 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 GYG1P46976 350 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 HAND2P61296 217 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 RBM6P78332 1123 aaKnown RBP8.92□□□□□ -0.98
COL6A3-208ENST00000468792 ST5P78524 1137 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 SART3Q15020 963 aaKnown RBP8.92□□□□□ -0.98
COL6A3-208ENST00000468792 UVSSAQ2YD98 709 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 PRR5LQ6MZQ0 368 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 MFSD6Q6ZSS7 791 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 FLAD1Q8NFF5 587 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 FBXO18Q8NFZ0 1043 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 WDR66Q8TBY9 1149 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 NSUN4Q96CB9 384 aaKnown RBP8.92□□□□□ -0.98
COL6A3-208ENST00000468792 CRAMP1Q96RY5 1269 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 PPP1R9BQ96SB3 815 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 ARMT1Q9H993 441 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 ATP8A2Q9NTI2 1148 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 PODXL2Q9NZ53 605 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 RCOR1Q9UKL0 485 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 BRPF3Q9ULD4 1205 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 NSFL1CQ9UNZ2 370 aaKnown RBP8.92□□□□□ -0.98
COL6A3-208ENST00000468792 SLC4A4Q9Y6R1 1079 aa8.92□□□□□ -0.98
COL6A3-208ENST00000468792 ATP2B4P23634 1241 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 ADD1P35611 737 aaKnown RBP8.91□□□□□ -0.98
COL6A3-208ENST00000468792 NASPP49321 788 aaPredicted RBP8.91□□□□□ -0.98
COL6A3-208ENST00000468792 CCDC173Q0VFZ6 552 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 SBK1Q52WX2 424 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 HS1BP3Q53T59 392 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 FAM182BQ5T319 152 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 APOA5Q6Q788 366 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 CYB5R4Q7L1T6 521 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 BRAPQ7Z569 592 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 TTC6Q86TZ1 520 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 LCORLQ8N3X6 602 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 TDRD7Q8NHU6 1098 aaKnown RBP8.91□□□□□ -0.98
COL6A3-208ENST00000468792 LEO1Q8WVC0 666 aaPredicted RBP8.91□□□□□ -0.98
COL6A3-208ENST00000468792 ANP32BQ92688 251 aaKnown RBP8.91□□□□□ -0.98
COL6A3-208ENST00000468792 RBM17Q96I25 401 aaKnown RBP8.91□□□□□ -0.98
COL6A3-208ENST00000468792 CHAMP1Q96JM3 812 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 ZNF396Q96N95 335 aaPredicted RBP8.91□□□□□ -0.98
COL6A3-208ENST00000468792 LY9Q9HBG7 655 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 RAI14Q9P0K7 980 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 ZSWIM5Q9P217 1185 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 MAST2Q6P0Q8 1798 aa8.91□□□□□ -0.98
COL6A3-208ENST00000468792 TNRC6CQ9HCJ0 1690 aaKnown RBP8.91□□□□□ -0.98
COL6A3-208ENST00000468792 CCDC196A0A1B0GTZ2 297 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 GOLGA8BA8MQT2 603 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 CPLX1O14810 134 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 ZBTB43O43298 467 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 FIBPO43427 364 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 SERPINB2P05120 415 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 TDO2P48775 406 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 METAP2P50579 478 aaKnown RBP eCLIP8.9□□□□□ -0.98
COL6A3-208ENST00000468792 PPP4CP60510 307 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 CCT2P78371 535 aaKnown RBP8.9□□□□□ -0.98
COL6A3-208ENST00000468792 PLCB2Q00722 1185 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 PPARAQ07869 468 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 NTRK3Q16288 839 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 RBM43Q6ZSC3 357 aaKnown RBP8.9□□□□□ -0.98
COL6A3-208ENST00000468792 CHST3Q7LGC8 479 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 ESR2Q92731 530 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 SPATA32Q96LK8 384 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 GDPD2Q9HCC8 539 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 DDX19AQ9NUU7 478 aaKnown RBP8.9□□□□□ -0.98
COL6A3-208ENST00000468792 RBM27Q9P2N5 1060 aaKnown RBP8.9□□□□□ -0.98
COL6A3-208ENST00000468792 ABCF2Q9UG63 623 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 EP400Q96L91 3159 aa8.9□□□□□ -0.98
COL6A3-208ENST00000468792 CHD4Q14839 1912 aa8.9□□□□□ -0.99
COL6A3-208ENST00000468792 TAF1P21675 1872 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 BRWD3Q6RI45 1802 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 NEDD4P46934 1319 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 SYCE3A1L190 88 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 B4E1Z4 1266 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 POLRMTO00411 1230 aaKnown RBP8.89□□□□□ -0.99
COL6A3-208ENST00000468792 ORC4O43929 436 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 CAVIN2O95810 425 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 IL1R1P14778 569 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 IFNAR1P17181 557 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 GSTO1P78417 241 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms