RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 ZDHHC9Q9Y397 364 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 CFAP58Q5T655 872 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 CDC37L1Q7L3B6 337 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 ZNF579Q8NAF0 562 aaKnown RBP7.97□□□□□ -1.13
SYNE1-216ENST00000461872 PLCD4Q9BRC7 762 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 MIS18AQ9NYP9 233 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 IFIT3O14879 490 aaKnown RBP7.97□□□□□ -1.13
SYNE1-216ENST00000461872 CADPS2Q86UW7 1296 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 FNBP4Q8N3X1 1017 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-216ENST00000461872 PANX2Q96RD6 677 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 NAP1L3Q99457 506 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-216ENST00000461872 MYD88Q99836 296 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 GCOM1H8Y6P7 765 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-216ENST00000461872 MYZAPP0CAP1 466 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 CAPN2P17655 700 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 SWAP70Q9UH65 585 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 COL15A1P39059 1388 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 FAM76AQ8TAV0 307 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 NDC80O14777 642 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 LMAN1P49257 510 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 ATP2B3Q16720 1220 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 SLC26A8Q96RN1 970 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 RAI14Q9P0K7 980 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 LAD1O00515 517 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 SH3BGRP55822 239 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-216ENST00000461872 CNPY4Q8N129 248 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 ERCC6L2Q5T890 1561 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 HSF2BPO75031 334 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 NAP1L1P55209 391 aaKnown RBP7.97□□□□□ -1.13
SYNE1-216ENST00000461872 FBXL16Q8N461 479 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 NSRP1Q9H0G5 558 aaKnown RBP7.97□□□□□ -1.13
SYNE1-216ENST00000461872 ORC2Q13416 577 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-216ENST00000461872 TERF2Q15554 542 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 ANKS4BQ8N8V4 417 aa7.97□□□□□ -1.13
SYNE1-216ENST00000461872 WWC3Q9ULE0 1092 aa7.96□□□□□ -1.13
SYNE1-216ENST00000461872 CHD2O14647 1828 aaKnown RBP7.96□□□□□ -1.13
SYNE1-216ENST00000461872 TRIM21P19474 475 aaKnown RBP7.96□□□□□ -1.13
SYNE1-216ENST00000461872 STXBP4Q6ZWJ1 553 aa7.96□□□□□ -1.13
SYNE1-216ENST00000461872 PALD1Q9ULE6 856 aa7.96□□□□□ -1.13
SYNE1-216ENST00000461872 APOBRQ0VD83 1088 aa7.96□□□□□ -1.13
SYNE1-216ENST00000461872 CALML4Q96GE6 196 aa7.96□□□□□ -1.13
SYNE1-216ENST00000461872 TAF5LO75529 589 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 RPAINQ86UA6 219 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 CALR3Q96L12 384 aaKnown RBP7.96□□□□□ -1.14
SYNE1-216ENST00000461872 ZNF215Q9UL58 517 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-216ENST00000461872 MSL3Q8N5Y2 521 aaKnown RBP7.96□□□□□ -1.14
SYNE1-216ENST00000461872 NECAB1Q8N987 351 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 TRMT1Q9NXH9 659 aaKnown RBP7.96□□□□□ -1.14
SYNE1-216ENST00000461872 SEC63Q9UGP8 760 aaKnown RBP7.96□□□□□ -1.14
SYNE1-216ENST00000461872 ZMYM6O95789 1325 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 UBA7P41226 1012 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 LDHCP07864 332 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 EVA1CP58658 441 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 GSTO1P78417 241 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 CAVIN4Q5BKX8 364 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 USPL1Q5W0Q7 1092 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 ZNF790Q6PG37 636 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 ANKRD18AQ8IVF6 992 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 P3H4Q92791 437 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 FOXP1Q9H334 677 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-216ENST00000461872 PSD3Q9NYI0 1048 aa7.96□□□□□ -1.14
SYNE1-216ENST00000461872 EEF1GP26641 437 aaKnown RBP7.95□□□□□ -1.14
SYNE1-216ENST00000461872 TNNC1P63316 161 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 UBE3CQ15386 1083 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 MCTP2Q6DN12 878 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 MED23Q9ULK4 1368 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 LIFRP42702 1097 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 GIMAP7Q8NHV1 300 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 XAGE3Q8WTP9 111 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 VIPAS39Q9H9C1 493 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 SYNRGQ9UMZ2 1314 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 CD163L1Q9NR16 1453 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 PDE6BP35913 854 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 ZHX1Q9UKY1 873 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-216ENST00000461872 CETN2P41208 172 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 SLC20A2Q08357 652 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 MTMR3Q13615 1198 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 AFAP1L1Q8TED9 768 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 BICC1Q9H694 974 aaKnown RBP7.95□□□□□ -1.14
SYNE1-216ENST00000461872 SELENOOQ9BVL4 669 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 PALLDQ8WX93 1383 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 CETN1Q12798 172 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 TTC31Q49AM3 519 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-216ENST00000461872 G2E3Q7L622 706 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 TRIM58Q8NG06 486 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 TPCN1Q9ULQ1 816 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 TRIM37O94972 964 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 LMOD1P29536 600 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-216ENST00000461872 PKP1Q13835 747 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 PROSER2Q86WR7 435 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-216ENST00000461872 LRRC45Q96CN5 670 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 ZNF330Q9Y3S2 320 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-216ENST00000461872 AKAP12Q02952 1782 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 SMC1AQ14683 1233 aaKnown RBP7.95□□□□□ -1.14
SYNE1-216ENST00000461872 ELF2Q15723 593 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 ZMYM1Q5SVZ6 1142 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 SYT10Q6XYQ8 523 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 TCHHQ07283 1943 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 MROH5Q6ZUA9 1318 aa7.95□□□□□ -1.14
SYNE1-216ENST00000461872 DLG5Q8TDM6 1919 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms