RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 LCORLQ8N3X6 602 aa13.22□□□□□ -0.29
SCN9A-205ENST00000454569 ARMT1Q9H993 441 aa13.22□□□□□ -0.29
SCN9A-205ENST00000454569 ANO2Q9NQ90 1003 aa13.22□□□□□ -0.29
SCN9A-205ENST00000454569 GPAA1O43292 621 aa13.21□□□□□ -0.29
SCN9A-205ENST00000454569 VIL1P09327 827 aaKnown RBP13.21□□□□□ -0.29
SCN9A-205ENST00000454569 LAMA4Q16363 1823 aa13.21□□□□□ -0.29
SCN9A-205ENST00000454569 FOCADQ5VW36 1801 aa13.21□□□□□ -0.29
SCN9A-205ENST00000454569 ZSCAN25Q6NSZ9 544 aa13.21□□□□□ -0.29
SCN9A-205ENST00000454569 CASC1Q6TDU7 716 aa13.21□□□□□ -0.29
SCN9A-205ENST00000454569 TBC1D22AQ8WUA7 517 aa13.21□□□□□ -0.29
SCN9A-205ENST00000454569 RUFY2Q8WXA3 655 aa13.21□□□□□ -0.29
SCN9A-205ENST00000454569 RIOK1Q9BRS2 568 aaKnown RBP13.21□□□□□ -0.29
SCN9A-205ENST00000454569 CCDC171Q6TFL3 1326 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 ZNF541Q9H0D2 1346 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 FZD9O00144 591 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 MBD4O95243 580 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 GPR162Q16538 588 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 SPTY2D1Q68D10 685 aaPredicted RBP13.2□□□□□ -0.3
SCN9A-205ENST00000454569 DZIP1Q86YF9 867 aaKnown RBP13.2□□□□□ -0.3
SCN9A-205ENST00000454569 STRBPQ96SI9 672 aaKnown RBP13.2□□□□□ -0.3
SCN9A-205ENST00000454569 GMLQ99445 158 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 TTF2Q9UNY4 1162 aaKnown RBP13.2□□□□□ -0.3
SCN9A-205ENST00000454569 TAF6LQ9Y6J9 622 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 RAD50Q92878 1312 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 HSPD1P10809 573 aaKnown RBP13.2□□□□□ -0.3
SCN9A-205ENST00000454569 RSBN1LQ6PCB5 846 aaPredicted RBP13.2□□□□□ -0.3
SCN9A-205ENST00000454569 TICAM2Q86XR7 235 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 ZGPATQ8N5A5 531 aaKnown RBP13.2□□□□□ -0.3
SCN9A-205ENST00000454569 JDP2Q8WYK2 163 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 AATFQ9NY61 560 aaKnown RBP eCLIP13.2□□□□□ -0.3
SCN9A-205ENST00000454569 PALD1Q9ULE6 856 aa13.2□□□□□ -0.3
SCN9A-205ENST00000454569 MYH1P12882 1939 aa13.19□□□□□ -0.3
SCN9A-205ENST00000454569 SMIM22K7EJ46 135 aa13.19□□□□□ -0.3
SCN9A-205ENST00000454569 LMNB1P20700 586 aa13.19□□□□□ -0.3
SCN9A-205ENST00000454569 COL9A3Q14050 684 aaPredicted RBP13.19□□□□□ -0.3
SCN9A-205ENST00000454569 ZNF467Q7Z7K2 595 aaPredicted RBP13.19□□□□□ -0.3
SCN9A-205ENST00000454569 MAP4K1Q92918 833 aa13.19□□□□□ -0.3
SCN9A-205ENST00000454569 DAGLAQ9Y4D2 1042 aa13.19□□□□□ -0.3
SCN9A-205ENST00000454569 POLR2AP24928 1970 aaKnown RBP13.19□□□□□ -0.3
SCN9A-205ENST00000454569 MROH7-TTC4A0A0A0MT08 1334 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 MAGEB6P1A0A0J9YX57 407 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 PRKAR2AP13861 404 aaKnown RBP13.18□□□□□ -0.3
SCN9A-205ENST00000454569 FXR2P51116 673 aaKnown RBP eCLIP13.18□□□□□ -0.3
SCN9A-205ENST00000454569 FKBP1AP62942 108 aaKnown RBP13.18□□□□□ -0.3
SCN9A-205ENST00000454569 EVX2Q03828 476 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 LRRFIP1Q32MZ4 808 aaKnown RBP13.18□□□□□ -0.3
SCN9A-205ENST00000454569 TPRNQ4KMQ1 711 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 CIAPIN1Q6FI81 312 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 SH3RF3Q8TEJ3 882 aaPredicted RBP13.18□□□□□ -0.3
SCN9A-205ENST00000454569 AIDAQ96BJ3 306 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 TBC1D32Q96NH3 1257 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 KIF2CQ99661 725 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 C22orf23Q9BZE7 217 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 EPB41L4AQ9HCS5 686 aaPredicted RBP13.18□□□□□ -0.3
SCN9A-205ENST00000454569 RNF181Q9P0P0 153 aa13.18□□□□□ -0.3
SCN9A-205ENST00000454569 RBM19Q9Y4C8 960 aaKnown RBP13.18□□□□□ -0.3
SCN9A-205ENST00000454569 GAKO14976 1311 aa13.17□□□□□ -0.3
SCN9A-205ENST00000454569 GSG1L2A8MUP6 293 aa13.17□□□□□ -0.3
SCN9A-205ENST00000454569 REC8O95072 547 aa13.17□□□□□ -0.3
SCN9A-205ENST00000454569 NECTIN1Q15223 517 aa13.17□□□□□ -0.3
SCN9A-205ENST00000454569 C9orf131Q5VYM1 1079 aa13.17□□□□□ -0.3
SCN9A-205ENST00000454569 SDR42E1Q8WUS8 393 aa13.17□□□□□ -0.3
SCN9A-205ENST00000454569 RYDENQ9NUL5 291 aaKnown RBP13.17□□□□□ -0.3
SCN9A-205ENST00000454569 RBM8AQ9Y5S9 174 aaKnown RBP13.17□□□□□ -0.3
SCN9A-205ENST00000454569 NAV1Q8NEY1 1877 aa13.17□□□□□ -0.3
SCN9A-205ENST00000454569 GPR75-ASB3A0A0A6YYF3 556 aa13.16□□□□□ -0.3
SCN9A-205ENST00000454569 EGFRP00533 1210 aa13.16□□□□□ -0.3
SCN9A-205ENST00000454569 BTDP43251 543 aa13.16□□□□□ -0.3
SCN9A-205ENST00000454569 CRKP46108 304 aa13.16□□□□□ -0.3
SCN9A-205ENST00000454569 RHBDL3P58872 404 aa13.16□□□□□ -0.3
SCN9A-205ENST00000454569 FAM163AQ96GL9 167 aaPredicted RBP13.16□□□□□ -0.3
SCN9A-205ENST00000454569 SUGT1Q9Y2Z0 365 aa13.16□□□□□ -0.3
SCN9A-205ENST00000454569 GJA3Q9Y6H8 435 aa13.16□□□□□ -0.3
SCN9A-205ENST00000454569 FGAP02671 866 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 HSPA4P34932 840 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 RBM25P49756 843 aaKnown RBP13.15□□□□□ -0.3
SCN9A-205ENST00000454569 APOBEC3HQ6NTF7 200 aaKnown RBP13.15□□□□□ -0.3
SCN9A-205ENST00000454569 KIAA1211Q6ZU35 1233 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 NKX2-3Q8TAU0 364 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 TACC3Q9Y6A5 838 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 SLC4A4Q9Y6R1 1079 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 LAMB1P07942 1786 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 PATL2C9JE40 543 aaKnown RBP13.15□□□□□ -0.3
SCN9A-205ENST00000454569 GMPSP49915 693 aaPredicted RBP13.15□□□□□ -0.3
SCN9A-205ENST00000454569 PPP4CP60510 307 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 GSTO1P78417 241 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 HHIPL2Q6UWX4 724 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 IFNL3Q8IZI9 196 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 PRMT6Q96LA8 375 aaPredicted RBP13.15□□□□□ -0.3
SCN9A-205ENST00000454569 DSCC1Q9BVC3 393 aa13.15□□□□□ -0.3
SCN9A-205ENST00000454569 DDX60LQ5H9U9 1706 aaKnown RBP13.15□□□□□ -0.31
SCN9A-205ENST00000454569 CYP2D7A0A087X1C5 515 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 SLC27A2O14975 620 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 DDNO94850 711 aaPredicted RBP13.14□□□□□ -0.31
SCN9A-205ENST00000454569 LDHCP07864 332 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 CYP21A2P08686 494 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 CACNB3P54284 484 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 EIF6P56537 245 aaKnown RBP13.14□□□□□ -0.31
SCN9A-205ENST00000454569 CFAP100Q494V2 611 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 CREB3L3Q68CJ9 461 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms