RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 MIGA1Q8NAN2 632 aa15.76■□□□□ 0.11
VPS33A-202ENST00000451053 RILPL2Q969X0 211 aa15.76■□□□□ 0.11
VPS33A-202ENST00000451053 RNF113AO15541 343 aaKnown RBP15.75■□□□□ 0.11
VPS33A-202ENST00000451053 SDSP20132 328 aa15.75■□□□□ 0.11
VPS33A-202ENST00000451053 SPDYE2Q495Y8 402 aa15.75■□□□□ 0.11
VPS33A-202ENST00000451053 ZSCAN25Q6NSZ9 544 aa15.75■□□□□ 0.11
VPS33A-202ENST00000451053 CDC42EP5Q6NZY7 148 aa15.75■□□□□ 0.11
VPS33A-202ENST00000451053 ZC3H15Q8WU90 426 aaKnown RBP15.75■□□□□ 0.11
VPS33A-202ENST00000451053 ZNF70Q9UC06 446 aaPredicted RBP15.75■□□□□ 0.11
VPS33A-202ENST00000451053 PGAP2Q9UHJ9 254 aa15.75■□□□□ 0.11
VPS33A-202ENST00000451053 SCAF8Q9UPN6 1271 aaKnown RBP15.75■□□□□ 0.11
VPS33A-202ENST00000451053 MYO1BO43795 1136 aa15.74■□□□□ 0.11
VPS33A-202ENST00000451053 CACNB3P54284 484 aa15.74■□□□□ 0.11
VPS33A-202ENST00000451053 DYNLL1P63167 89 aaKnown RBP15.74■□□□□ 0.11
VPS33A-202ENST00000451053 UBE3CQ15386 1083 aa15.74■□□□□ 0.11
VPS33A-202ENST00000451053 MAP1SQ66K74 1059 aaPredicted RBP15.74■□□□□ 0.11
VPS33A-202ENST00000451053 TMED8Q6PL24 325 aaPredicted RBP15.74■□□□□ 0.11
VPS33A-202ENST00000451053 VEZTQ9HBM0 779 aa15.74■□□□□ 0.11
VPS33A-202ENST00000451053 USP40Q9NVE5 1235 aa15.74■□□□□ 0.11
VPS33A-202ENST00000451053 AATFQ9NY61 560 aaKnown RBP eCLIP15.74■□□□□ 0.11
VPS33A-202ENST00000451053 AK9Q5TCS8 1911 aa15.73■□□□□ 0.11
VPS33A-202ENST00000451053 RHBDL3P58872 404 aa15.73■□□□□ 0.11
VPS33A-202ENST00000451053 CHADLQ6NUI6 762 aa15.73■□□□□ 0.11
VPS33A-202ENST00000451053 SH3RF3Q8TEJ3 882 aaPredicted RBP15.73■□□□□ 0.11
VPS33A-202ENST00000451053 DCPSQ96C86 337 aaKnown RBP15.73■□□□□ 0.11
VPS33A-202ENST00000451053 NOL10Q9BSC4 688 aaKnown RBP15.73■□□□□ 0.11
VPS33A-202ENST00000451053 RFX7Q2KHR2 1363 aa15.73■□□□□ 0.11
VPS33A-202ENST00000451053 PITPNM2Q9BZ72 1349 aa15.72■□□□□ 0.11
VPS33A-202ENST00000451053 ADM5C9JUS6 153 aa15.72■□□□□ 0.11
VPS33A-202ENST00000451053 TOMM70O94826 608 aa15.72■□□□□ 0.11
VPS33A-202ENST00000451053 BAG3O95817 575 aa15.72■□□□□ 0.11
VPS33A-202ENST00000451053 ZFYP08048 801 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-202ENST00000451053 PPP4CP60510 307 aa15.72■□□□□ 0.11
VPS33A-202ENST00000451053 LRRFIP1Q32MZ4 808 aaKnown RBP15.72■□□□□ 0.11
VPS33A-202ENST00000451053 DLK2Q6UY11 383 aa15.72■□□□□ 0.11
VPS33A-202ENST00000451053 RBM46Q8TBY0 533 aaKnown RBP15.72■□□□□ 0.11
VPS33A-202ENST00000451053 OSBP2Q969R2 916 aa15.72■□□□□ 0.11
VPS33A-202ENST00000451053 RIOK1Q9BRS2 568 aaKnown RBP15.72■□□□□ 0.11
VPS33A-202ENST00000451053 GLIS2Q9BZE0 524 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-202ENST00000451053 PUS7LQ9H0K6 701 aaKnown RBP15.72■□□□□ 0.11
VPS33A-202ENST00000451053 MAGEB6P1A0A0J9YX57 407 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 TCP10L2B9ZVM9 353 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 M0R2C6 588 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 WDHD1O75717 1129 aaPredicted RBP15.71■□□□□ 0.11
VPS33A-202ENST00000451053 NFIAQ12857 509 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 BMP2KLQ5H9B9 411 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 ZMYM1Q5SVZ6 1142 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 KRT26Q7Z3Y9 468 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 USP48Q86UV5 1035 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 APOBEC3FQ8IUX4 373 aaKnown RBP15.71■□□□□ 0.11
VPS33A-202ENST00000451053 LCORLQ8N3X6 602 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 APPBP2Q92624 585 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 SEC62Q99442 399 aaKnown RBP15.71■□□□□ 0.11
VPS33A-202ENST00000451053 ARMT1Q9H993 441 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 TMOD2Q9NZR1 351 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 CNTNAP1P78357 1384 aa15.71■□□□□ 0.11
VPS33A-202ENST00000451053 POLR2AP24928 1970 aaKnown RBP15.7■□□□□ 0.1
VPS33A-202ENST00000451053 MBD4O95243 580 aa15.7■□□□□ 0.1
VPS33A-202ENST00000451053 PLCG2P16885 1265 aa15.7■□□□□ 0.1
VPS33A-202ENST00000451053 NMIQ13287 307 aaPredicted RBP15.7■□□□□ 0.1
VPS33A-202ENST00000451053 SULF1Q8IWU6 871 aa15.7■□□□□ 0.1
VPS33A-202ENST00000451053 TEX11Q8IYF3 940 aa15.7■□□□□ 0.1
VPS33A-202ENST00000451053 SMC1BQ8NDV3 1235 aa15.7■□□□□ 0.1
VPS33A-202ENST00000451053 FAM227BQ96M60 508 aa15.7■□□□□ 0.1
VPS33A-202ENST00000451053 DDX4Q9NQI0 724 aaKnown RBP15.7■□□□□ 0.1
VPS33A-202ENST00000451053 CDK5RAP2Q96SN8 1893 aa15.69■□□□□ 0.1
VPS33A-202ENST00000451053 A0A0D9SFI3 127 aa15.69■□□□□ 0.1
VPS33A-202ENST00000451053 TRAF5O00463 557 aa15.69■□□□□ 0.1
VPS33A-202ENST00000451053 ITGBL1O95965 494 aaPredicted RBP15.69■□□□□ 0.1
VPS33A-202ENST00000451053 FMR1Q06787 632 aaKnown RBP eCLIP15.69■□□□□ 0.1
VPS33A-202ENST00000451053 PICALMQ13492 652 aa15.69■□□□□ 0.1
VPS33A-202ENST00000451053 CDC37L1Q7L3B6 337 aa15.69■□□□□ 0.1
VPS33A-202ENST00000451053 AIDAQ96BJ3 306 aa15.69■□□□□ 0.1
VPS33A-202ENST00000451053 IDI2Q9BXS1 227 aa15.69■□□□□ 0.1
VPS33A-202ENST00000451053 FAM198AQ9UFP1 575 aa15.69■□□□□ 0.1
VPS33A-202ENST00000451053 TCP10Q12799 353 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 TNFAIP1Q13829 316 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 RASA3Q14644 834 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 FKBP1CQ5VVH2 108 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 PRAMEF18Q5VWM3 479 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 CCDC129Q6ZRS4 1044 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 TICAM2Q86XR7 235 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 CERS3Q8IU89 383 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 ZFPM1Q8IX07 1006 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 TGFBRAP1Q8WUH2 860 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 TMEM39BQ9GZU3 492 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 DEFB129Q9H1M3 183 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 DIAPH3Q9NSV4 1193 aa15.68■□□□□ 0.1
VPS33A-202ENST00000451053 FOCADQ5VW36 1801 aa15.67■□□□□ 0.1
VPS33A-202ENST00000451053 GPAA1O43292 621 aa15.67■□□□□ 0.1
VPS33A-202ENST00000451053 PRKAB2O43741 272 aa15.67■□□□□ 0.1
VPS33A-202ENST00000451053 MAPKAPK5Q8IW41 473 aa15.67■□□□□ 0.1
VPS33A-202ENST00000451053 CDAN1Q8IWY9 1227 aa15.67■□□□□ 0.1
VPS33A-202ENST00000451053 STRBPQ96SI9 672 aaKnown RBP15.67■□□□□ 0.1
VPS33A-202ENST00000451053 CRNKL1Q9BZJ0 848 aaKnown RBP15.67■□□□□ 0.1
VPS33A-202ENST00000451053 HELLSQ9NRZ9 838 aa15.67■□□□□ 0.1
VPS33A-202ENST00000451053 HIP1O00291 1037 aa15.66■□□□□ 0.1
VPS33A-202ENST00000451053 ENTPD3O75355 529 aa15.66■□□□□ 0.1
VPS33A-202ENST00000451053 CHMLP26374 656 aa15.66■□□□□ 0.1
VPS33A-202ENST00000451053 TNNI2P48788 182 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms