RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 SMTNL1A8MU46 457 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 MCAMP43121 646 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 SDF4Q9BRK5 362 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 GJB4Q9NTQ9 266 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 KIAA1468Q9P260 1216 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 MYH14Q7Z406 1995 aaKnown RBP16.6■□□□□ 0.25
LIG1-202ENST00000427526 VGLL2Q8N8G2 317 aa16.6■□□□□ 0.25
LIG1-202ENST00000427526 NAT10Q9H0A0 1025 aaKnown RBP16.6■□□□□ 0.25
LIG1-202ENST00000427526 MYH7P12883 1935 aa16.6■□□□□ 0.25
LIG1-202ENST00000427526 AKAP11Q9UKA4 1901 aa16.6■□□□□ 0.25
LIG1-202ENST00000427526 SPTLC2O15270 562 aa16.6■□□□□ 0.25
LIG1-202ENST00000427526 STK38Q15208 465 aa16.6■□□□□ 0.25
LIG1-202ENST00000427526 AOPEPQ8N6M6 819 aa16.6■□□□□ 0.25
LIG1-202ENST00000427526 ZNF512BQ96KM6 892 aaPredicted RBP16.6■□□□□ 0.25
LIG1-202ENST00000427526 SEC31BQ9NQW1 1179 aa16.6■□□□□ 0.25
LIG1-202ENST00000427526 PAXBP1Q9Y5B6 917 aa16.6■□□□□ 0.25
LIG1-202ENST00000427526 KIF28PB7ZC32 967 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 GTF2E1P29083 439 aaPredicted RBP16.59■□□□□ 0.25
LIG1-202ENST00000427526 RALYLQ86SE5 291 aaKnown RBP16.59■□□□□ 0.25
LIG1-202ENST00000427526 BPIFA3Q9BQP9 254 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 ADD2P35612 726 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 KIF23Q02241 960 aaPredicted RBP16.59■□□□□ 0.25
LIG1-202ENST00000427526 AXDND1Q5T1B0 1012 aaPredicted RBP16.59■□□□□ 0.25
LIG1-202ENST00000427526 C4AP0C0L4 1744 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 C4BP0C0L5 1744 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 ANKRD36CQ5JPF3 1778 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 SNAP23O00161 211 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 PDE8BO95263 885 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 SF3A1Q15459 793 aaKnown RBP16.59■□□□□ 0.25
LIG1-202ENST00000427526 TPD52L1Q16890 204 aaPredicted RBP16.59■□□□□ 0.25
LIG1-202ENST00000427526 NBPF11Q86T75 865 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 NKX2-3Q8TAU0 364 aa16.59■□□□□ 0.25
LIG1-202ENST00000427526 ATRNO75882 1429 aa16.58■□□□□ 0.25
LIG1-202ENST00000427526 CPLX1O14810 134 aa16.58■□□□□ 0.24
LIG1-202ENST00000427526 CCZ1BP86790 482 aa16.58■□□□□ 0.24
LIG1-202ENST00000427526 CCZ1P86791 482 aaPredicted RBP16.58■□□□□ 0.24
LIG1-202ENST00000427526 SYCP1Q15431 976 aa16.58■□□□□ 0.24
LIG1-202ENST00000427526 RAB11FIP4Q86YS3 637 aa16.58■□□□□ 0.24
LIG1-202ENST00000427526 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.58■□□□□ 0.244e-7■■■■□ 19.6
LIG1-202ENST00000427526 SKILP12757 684 aa16.58■□□□□ 0.24
LIG1-202ENST00000427526 DPCR1Q3MIW9 517 aa16.58■□□□□ 0.24
LIG1-202ENST00000427526 DENND2AQ9ULE3 1009 aa16.58■□□□□ 0.24
LIG1-202ENST00000427526 NTSR2O95665 410 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 PARP10Q53GL7 1025 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 PPP4R3BQ5MIZ7 849 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 ANO1Q5XXA6 986 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 KCND1Q9NSA2 647 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 CCDC69A6NI79 296 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 USP27XA6NNY8 438 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 ZNF202O95125 648 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 CMA1P23946 247 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 NYAP1Q6ZVC0 841 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 SMAP1Q8IYB5 467 aaPredicted RBP16.57■□□□□ 0.24
LIG1-202ENST00000427526 PDCL2Q8N4E4 241 aa16.57■□□□□ 0.24
LIG1-202ENST00000427526 SLC9C2Q5TAH2 1124 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 SYNE3Q6ZMZ3 975 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 FILIP1Q7Z7B0 1213 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 TBC1D10CQ8IV04 446 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 ANGEL1Q9UNK9 670 aaKnown RBP16.56■□□□□ 0.24
LIG1-202ENST00000427526 NCBP1Q09161 790 aaKnown RBP16.56■□□□□ 0.24
LIG1-202ENST00000427526 UBE3CQ15386 1083 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 CYB5R4Q7L1T6 521 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 AK7Q96M32 723 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 OSBPL5Q9H0X9 879 aaPredicted RBP16.56■□□□□ 0.24
LIG1-202ENST00000427526 ZMYM6O95789 1325 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 SLC39A14Q15043 492 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 TTF1Q15361 905 aaPredicted RBP16.56■□□□□ 0.24
LIG1-202ENST00000427526 CEP135Q66GS9 1140 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 FBXW7Q969H0 707 aa16.56■□□□□ 0.24
LIG1-202ENST00000427526 PIH1D3Q9NQM4 214 aaKnown RBP16.56■□□□□ 0.24
LIG1-202ENST00000427526 WDHD1O75717 1129 aaPredicted RBP16.55■□□□□ 0.24
LIG1-202ENST00000427526 PHKA1P46020 1223 aa16.55■□□□□ 0.24
LIG1-202ENST00000427526 IMPACTQ9P2X3 320 aa16.55■□□□□ 0.24
LIG1-202ENST00000427526 SH2B2O14492 632 aaPredicted RBP16.55■□□□□ 0.24
LIG1-202ENST00000427526 SLC3A2P08195 630 aaKnown RBP16.55■□□□□ 0.24
LIG1-202ENST00000427526 TRDNQ13061 729 aa16.55■□□□□ 0.24
LIG1-202ENST00000427526 BICDL1Q6ZP65 573 aa16.55■□□□□ 0.24
LIG1-202ENST00000427526 PFKFB1P16118 471 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 NLRP12P59046 1061 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 CCDC102BQ68D86 513 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 AIFM3Q96NN9 605 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 MPHOSPH8Q99549 860 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 GSDMDP57764 484 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 NCAPHQ15003 741 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 CCDC112Q8NEF3 446 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 SPATA31A6Q5VVP1 1343 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 TCRBV5S4A2TA0A5A2 114 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 ZNF652Q9Y2D9 606 aa16.54■□□□□ 0.24
LIG1-202ENST00000427526 MROH7-TTC4A0A0A0MT08 1334 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 MROH5Q6ZUA9 1318 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 ARID4AP29374 1257 aaPredicted RBP16.53■□□□□ 0.24
LIG1-202ENST00000427526 METAP2P50579 478 aaKnown RBP eCLIP16.53■□□□□ 0.24
LIG1-202ENST00000427526 PUM3Q15397 648 aaKnown RBP16.53■□□□□ 0.24
LIG1-202ENST00000427526 CCDC152Q4G0S7 254 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 APOA5Q6Q788 366 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 CCAR2Q8N163 923 aaKnown RBP16.53■□□□□ 0.24
LIG1-202ENST00000427526 IGDCC4Q8TDY8 1250 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 TIGD1Q96MW7 591 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 ALG1Q9BT22 464 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 SENP2Q9HC62 589 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms