RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 ECHDC1Q9NTX5 307 aa15.21■□□□□ 0.03
SKA1-203ENST00000417656 ZBTB47Q9UFB7 747 aaPredicted RBP15.21■□□□□ 0.03
SKA1-203ENST00000417656 GOLIM4O00461 696 aa15.2■□□□□ 0.02
SKA1-203ENST00000417656 IDH1O75874 414 aaKnown RBP15.2■□□□□ 0.02
SKA1-203ENST00000417656 CELF2O95319 508 aaKnown RBP15.2■□□□□ 0.02
SKA1-203ENST00000417656 CACNB3P54284 484 aa15.2■□□□□ 0.02
SKA1-203ENST00000417656 LNPKQ9C0E8 428 aa15.2■□□□□ 0.02
SKA1-203ENST00000417656 SSC5DA1L4H1 1573 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 SALL3Q9BXA9 1300 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 PAPPA2Q9BXP8 1791 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 TCP10L2B9ZVM9 353 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 BTDP43251 543 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 GSTO1P78417 241 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 PRAMEF18Q5VWM3 479 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 NAA16Q6N069 864 aaPredicted RBP15.19■□□□□ 0.02
SKA1-203ENST00000417656 CDC42EP5Q6NZY7 148 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 SLF2Q8IX21 1173 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 HAUS7Q99871 368 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 PAG1Q9NWQ8 432 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 TMOD2Q9NZR1 351 aa15.19■□□□□ 0.02
SKA1-203ENST00000417656 CDK5RAP2Q96SN8 1893 aa15.18■□□□□ 0.02
SKA1-203ENST00000417656 TMEM88BA6NKF7 163 aa15.18■□□□□ 0.02
SKA1-203ENST00000417656 NEFLP07196 543 aa15.18■□□□□ 0.02
SKA1-203ENST00000417656 MX1P20591 662 aa15.18■□□□□ 0.02
SKA1-203ENST00000417656 TTF1Q15361 905 aaPredicted RBP15.18■□□□□ 0.02
SKA1-203ENST00000417656 CST9Q5W186 159 aa15.18■□□□□ 0.02
SKA1-203ENST00000417656 DEFB129Q9H1M3 183 aa15.18■□□□□ 0.02
SKA1-203ENST00000417656 CREBZFQ9NS37 354 aa15.18■□□□□ 0.02
SKA1-203ENST00000417656 CNTNAP1P78357 1384 aa15.18■□□□□ 0.02
SKA1-203ENST00000417656 RFX7Q2KHR2 1363 aa15.18■□□□□ 0.02
SKA1-203ENST00000417656 TTC41PQ6P2S7 1318 aa15.17■□□□□ 0.02
SKA1-203ENST00000417656 NUCB1Q02818 461 aa15.17■□□□□ 0.02
SKA1-203ENST00000417656 TNFAIP1Q13829 316 aa15.17■□□□□ 0.02
SKA1-203ENST00000417656 RASA3Q14644 834 aa15.17■□□□□ 0.02
SKA1-203ENST00000417656 ADGRA1Q86SQ6 560 aa15.17■□□□□ 0.02
SKA1-203ENST00000417656 CHD1LQ86WJ1 897 aa15.17■□□□□ 0.02
SKA1-203ENST00000417656 MAGEB6Q8N7X4 407 aa15.17■□□□□ 0.02
SKA1-203ENST00000417656 FAM163AQ96GL9 167 aaPredicted RBP15.17■□□□□ 0.02
SKA1-203ENST00000417656 FOCADQ5VW36 1801 aa15.17■□□□□ 0.02
SKA1-203ENST00000417656 GPR75-ASB3A0A0A6YYF3 556 aa15.16■□□□□ 0.02
SKA1-203ENST00000417656 LDHCP07864 332 aa15.16■□□□□ 0.02
SKA1-203ENST00000417656 MAP3K12Q12852 859 aa15.16■□□□□ 0.02
SKA1-203ENST00000417656 NFIAQ12857 509 aa15.16■□□□□ 0.02
SKA1-203ENST00000417656 CDAN1Q8IWY9 1227 aa15.16■□□□□ 0.02
SKA1-203ENST00000417656 PI4K2BQ8TCG2 481 aa15.16■□□□□ 0.02
SKA1-203ENST00000417656 USP40Q9NVE5 1235 aa15.16■□□□□ 0.02
SKA1-203ENST00000417656 PPP2R3BQ9Y5P8 575 aa15.16■□□□□ 0.02
SKA1-203ENST00000417656 OTOFQ9HC10 1997 aa15.16■□□□□ 0.02
SKA1-203ENST00000417656 PDE6AP16499 860 aa15.15■□□□□ 0.02
SKA1-203ENST00000417656 CYP7A1P22680 504 aa15.15■□□□□ 0.02
SKA1-203ENST00000417656 TNNI2P48788 182 aa15.15■□□□□ 0.02
SKA1-203ENST00000417656 RHBDL3P58872 404 aa15.15■□□□□ 0.02
SKA1-203ENST00000417656 TMEM39BQ9GZU3 492 aa15.15■□□□□ 0.02
SKA1-203ENST00000417656 GBA2Q9HCG7 927 aaPredicted RBP15.15■□□□□ 0.02
SKA1-203ENST00000417656 AATFQ9NY61 560 aaKnown RBP eCLIP15.15■□□□□ 0.02
SKA1-203ENST00000417656 ABT1Q9ULW3 272 aaKnown RBP15.15■□□□□ 0.02
SKA1-203ENST00000417656 RPAP1Q9BWH6 1393 aaPredicted RBP15.14■□□□□ 0.01
SKA1-203ENST00000417656 ERC2O15083 957 aa15.14■□□□□ 0.01
SKA1-203ENST00000417656 IGSF3O75054 1194 aa15.14■□□□□ 0.01
SKA1-203ENST00000417656 GLRX3O76003 335 aaKnown RBP15.14■□□□□ 0.01
SKA1-203ENST00000417656 MAP4K4O95819 1239 aaPredicted RBP15.14■□□□□ 0.01
SKA1-203ENST00000417656 NOL10Q9BSC4 688 aaKnown RBP15.14■□□□□ 0.01
SKA1-203ENST00000417656 NAV1Q8NEY1 1877 aa15.14■□□□□ 0.01
SKA1-203ENST00000417656 WDHD1O75717 1129 aaPredicted RBP15.13■□□□□ 0.01
SKA1-203ENST00000417656 NF2P35240 595 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 RGS3P49796 1198 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 PDE1AP54750 535 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 TCP10Q12799 353 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 DDX60LQ5H9U9 1706 aaKnown RBP15.13■□□□□ 0.01
SKA1-203ENST00000417656 NBPF12Q5TAG4 269 aaPredicted RBP15.13■□□□□ 0.01
SKA1-203ENST00000417656 SLC9C2Q5TAH2 1124 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 FKBP1CQ5VVH2 108 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 FAM83AQ86UY5 434 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 MIGA1Q8NAN2 632 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 SH3RF3Q8TEJ3 882 aaPredicted RBP15.13■□□□□ 0.01
SKA1-203ENST00000417656 TEPSINQ96N21 525 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 DDX4Q9NQI0 724 aaKnown RBP15.13■□□□□ 0.01
SKA1-203ENST00000417656 FAM198AQ9UFP1 575 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 STAP2Q9UGK3 403 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 TLL2Q9Y6L7 1015 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 ZNF532Q9HCE3 1301 aa15.13■□□□□ 0.01
SKA1-203ENST00000417656 AK9Q5TCS8 1911 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 CHGBP05060 677 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 DYNLL1P63167 89 aaKnown RBP15.12■□□□□ 0.01
SKA1-203ENST00000417656 PICALMQ13492 652 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 PRKG1Q13976 671 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 TTLL12Q14166 644 aaPredicted RBP15.12■□□□□ 0.01
SKA1-203ENST00000417656 SLFNL1Q499Z3 407 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 MOB2Q70IA6 237 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 TEX11Q8IYF3 940 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 C2orf69Q8N8R5 385 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 IDI2Q9BXS1 227 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.12■□□□□ 0.01
SKA1-203ENST00000417656 MKRN1Q9UHC7 482 aaKnown RBP15.12■□□□□ 0.01
SKA1-203ENST00000417656 FZD1Q9UP38 647 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 THSD7BQ9C0I4 1608 aa15.12■□□□□ 0.01
SKA1-203ENST00000417656 TCRBV5S4A2TA0A5A2 114 aa15.11■□□□□ 0.01
SKA1-203ENST00000417656 BAG3O95817 575 aa15.11■□□□□ 0.01
SKA1-203ENST00000417656 PDE4AP27815 886 aa15.11■□□□□ 0.01
SKA1-203ENST00000417656 ADD2P35612 726 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms