RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 BTDP43251 543 aa17.77■□□□□ 0.44
LIMS1-206ENST00000414829 RASA3Q14644 834 aa17.77■□□□□ 0.44
LIMS1-206ENST00000414829 ZSCAN25Q6NSZ9 544 aa17.77■□□□□ 0.44
LIMS1-206ENST00000414829 PCDHAC2Q9Y5I4 1007 aa17.77■□□□□ 0.44
LIMS1-206ENST00000414829 TLL2Q9Y6L7 1015 aa17.77■□□□□ 0.44
LIMS1-206ENST00000414829 GOLIM4O00461 696 aa17.76■□□□□ 0.43
LIMS1-206ENST00000414829 PPP1R12BO60237 982 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-206ENST00000414829 CDC42EP5Q6NZY7 148 aa17.76■□□□□ 0.43
LIMS1-206ENST00000414829 ARMC9Q7Z3E5 817 aa17.76■□□□□ 0.43
LIMS1-206ENST00000414829 BOLA2Q9H3K6 86 aa17.76■□□□□ 0.43
LIMS1-206ENST00000414829 PIH1D3Q9NQM4 214 aaKnown RBP17.76■□□□□ 0.43
LIMS1-206ENST00000414829 USP40Q9NVE5 1235 aa17.76■□□□□ 0.43
LIMS1-206ENST00000414829 RASSF10A6NK89 507 aa17.75■□□□□ 0.43
LIMS1-206ENST00000414829 TCP10L2B9ZVM9 353 aa17.75■□□□□ 0.43
LIMS1-206ENST00000414829 ECE1P42892 770 aa17.75■□□□□ 0.43
LIMS1-206ENST00000414829 CST9Q5W186 159 aa17.75■□□□□ 0.43
LIMS1-206ENST00000414829 CHD1LQ86WJ1 897 aa17.75■□□□□ 0.43
LIMS1-206ENST00000414829 IDI2Q9BXS1 227 aa17.75■□□□□ 0.43
LIMS1-206ENST00000414829 MAST2Q6P0Q8 1798 aa17.75■□□□□ 0.43
LIMS1-206ENST00000414829 CNTNAP1P78357 1384 aa17.75■□□□□ 0.43
LIMS1-206ENST00000414829 AOX1Q06278 1338 aa17.74■□□□□ 0.43
LIMS1-206ENST00000414829 UNCXA6NJT0 531 aa17.74■□□□□ 0.43
LIMS1-206ENST00000414829 ENTPD3O75355 529 aa17.74■□□□□ 0.43
LIMS1-206ENST00000414829 NPM3O75607 178 aaKnown RBP17.74■□□□□ 0.43
LIMS1-206ENST00000414829 CYP7A1P22680 504 aa17.74■□□□□ 0.43
LIMS1-206ENST00000414829 NUCB1Q02818 461 aa17.74■□□□□ 0.43
LIMS1-206ENST00000414829 SAPCD2Q86UD0 394 aa17.74■□□□□ 0.43
LIMS1-206ENST00000414829 PAPPA2Q9BXP8 1791 aa17.74■□□□□ 0.43
LIMS1-206ENST00000414829 IGHDP01880 384 aa17.73■□□□□ 0.43
LIMS1-206ENST00000414829 PPP4CP60510 307 aa17.73■□□□□ 0.43
LIMS1-206ENST00000414829 TTLL12Q14166 644 aaPredicted RBP17.73■□□□□ 0.43
LIMS1-206ENST00000414829 DCAF15Q66K64 600 aa17.73■□□□□ 0.43
LIMS1-206ENST00000414829 MAGEB6Q8N7X4 407 aa17.73■□□□□ 0.43
LIMS1-206ENST00000414829 FAM151AQ8WW52 585 aa17.73■□□□□ 0.43
LIMS1-206ENST00000414829 ECM29Q5VYK3 1845 aa17.72■□□□□ 0.43
LIMS1-206ENST00000414829 HUNKP57058 714 aa17.72■□□□□ 0.43
LIMS1-206ENST00000414829 DEFB115Q30KQ5 88 aa17.72■□□□□ 0.43
LIMS1-206ENST00000414829 SLC9C2Q5TAH2 1124 aa17.72■□□□□ 0.43
LIMS1-206ENST00000414829 ZNF384Q8TF68 577 aa17.72■□□□□ 0.43
LIMS1-206ENST00000414829 KLRG1Q96E93 195 aa17.72■□□□□ 0.43
LIMS1-206ENST00000414829 LNPKQ9C0E8 428 aa17.72■□□□□ 0.43
LIMS1-206ENST00000414829 ANTXR1Q9H6X2 564 aa17.72■□□□□ 0.43
LIMS1-206ENST00000414829 STAP2Q9UGK3 403 aa17.72■□□□□ 0.43
LIMS1-206ENST00000414829 COL2A1P02458 1487 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-206ENST00000414829 RFX7Q2KHR2 1363 aa17.71■□□□□ 0.43
LIMS1-206ENST00000414829 ZFYP08048 801 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-206ENST00000414829 PDE6AP16499 860 aa17.71■□□□□ 0.43
LIMS1-206ENST00000414829 IREB2P48200 963 aaKnown RBP17.71■□□□□ 0.43
LIMS1-206ENST00000414829 FMR1Q06787 632 aaKnown RBP eCLIP17.71■□□□□ 0.43
LIMS1-206ENST00000414829 TICAM2Q86XR7 235 aa17.71■□□□□ 0.43
LIMS1-206ENST00000414829 TEX11Q8IYF3 940 aa17.71■□□□□ 0.43
LIMS1-206ENST00000414829 TMEM39BQ9GZU3 492 aa17.71■□□□□ 0.43
LIMS1-206ENST00000414829 NDUFB9Q9Y6M9 179 aa17.71■□□□□ 0.43
LIMS1-206ENST00000414829 SALL3Q9BXA9 1300 aa17.71■□□□□ 0.42
LIMS1-206ENST00000414829 CACNB3P54284 484 aa17.7■□□□□ 0.42
LIMS1-206ENST00000414829 PDE1AP54750 535 aa17.7■□□□□ 0.42
LIMS1-206ENST00000414829 RHBDL3P58872 404 aa17.7■□□□□ 0.42
LIMS1-206ENST00000414829 UBE3CQ15386 1083 aa17.7■□□□□ 0.42
LIMS1-206ENST00000414829 B4GALNT3Q6L9W6 998 aa17.7■□□□□ 0.42
LIMS1-206ENST00000414829 PAXIP1Q6ZW49 1069 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-206ENST00000414829 KBTBD3Q8NAB2 608 aa17.7■□□□□ 0.42
LIMS1-206ENST00000414829 PI4K2BQ8TCG2 481 aa17.7■□□□□ 0.42
LIMS1-206ENST00000414829 CCDC102AQ96A19 550 aa17.7■□□□□ 0.42
LIMS1-206ENST00000414829 AATFQ9NY61 560 aaKnown RBP eCLIP17.7■□□□□ 0.42
LIMS1-206ENST00000414829 SCAF8Q9UPN6 1271 aaKnown RBP17.7■□□□□ 0.42
LIMS1-206ENST00000414829 AKAP11Q9UKA4 1901 aa17.7■□□□□ 0.42
LIMS1-206ENST00000414829 TRPM7Q96QT4 1865 aa17.69■□□□□ 0.42
LIMS1-206ENST00000414829 WDHD1O75717 1129 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-206ENST00000414829 RGS3P49796 1198 aa17.69■□□□□ 0.42
LIMS1-206ENST00000414829 MAP3K11Q16584 847 aa17.69■□□□□ 0.42
LIMS1-206ENST00000414829 ZSCAN29Q8IWY8 852 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-206ENST00000414829 TEPSINQ96N21 525 aa17.69■□□□□ 0.42
LIMS1-206ENST00000414829 MKRN1Q9UHC7 482 aaKnown RBP17.69■□□□□ 0.42
LIMS1-206ENST00000414829 MAGEB6P1A0A0J9YX57 407 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 ADD2P35612 726 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 HTRA3P83110 453 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 TCP10Q12799 353 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 NFIAQ12857 509 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 NBPF12Q5TAG4 269 aaPredicted RBP17.68■□□□□ 0.42
LIMS1-206ENST00000414829 PRAMEF18Q5VWM3 479 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 ERICH6BQ5W0A0 696 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 TSHZ3Q63HK5 1081 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 RGMBQ6NW40 437 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 CENPQQ7L2Z9 268 aaPredicted RBP17.68■□□□□ 0.42
LIMS1-206ENST00000414829 CRNKL1Q9BZJ0 848 aaKnown RBP17.68■□□□□ 0.42
LIMS1-206ENST00000414829 DHX36Q9H2U1 1008 aaKnown RBP17.68■□□□□ 0.42
LIMS1-206ENST00000414829 FAM198AQ9UFP1 575 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 ANGEL1Q9UNK9 670 aaKnown RBP17.68■□□□□ 0.42
LIMS1-206ENST00000414829 ZNF532Q9HCE3 1301 aa17.68■□□□□ 0.42
LIMS1-206ENST00000414829 ATRNL1Q5VV63 1379 aa17.67■□□□□ 0.42
LIMS1-206ENST00000414829 NOGQ13253 232 aa17.67■□□□□ 0.42
LIMS1-206ENST00000414829 PICALMQ13492 652 aa17.67■□□□□ 0.42
LIMS1-206ENST00000414829 DLK2Q6UY11 383 aa17.67■□□□□ 0.42
LIMS1-206ENST00000414829 OTUD7AQ8TE49 926 aaPredicted RBP17.67■□□□□ 0.42
LIMS1-206ENST00000414829 EVI5LQ96CN4 794 aa17.67■□□□□ 0.42
LIMS1-206ENST00000414829 EDC3Q96F86 508 aaKnown RBP17.67■□□□□ 0.42
LIMS1-206ENST00000414829 DDRGK1Q96HY6 314 aa17.67■□□□□ 0.42
LIMS1-206ENST00000414829 CAPNS2Q96L46 248 aa17.67■□□□□ 0.42
LIMS1-206ENST00000414829 CSRNP1Q96S65 589 aa17.67■□□□□ 0.42
LIMS1-206ENST00000414829 OSBPL3Q9H4L5 887 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms