RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 TDO2P48775 406 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 GUCY1B3Q02153 619 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 ATL3Q6DD88 541 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 APOA5Q6Q788 366 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 FAM196AQ6ZSG2 479 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 SGMS1Q86VZ5 419 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 BCL11BQ9C0K0 894 aaPredicted RBP23.55■■□□□ 1.36
USP39-204ENST00000409766 ANKRD2Q9GZV1 360 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 RAI14Q9P0K7 980 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 ZSWIM5Q9P217 1185 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 ORC3Q9UBD5 711 aaPredicted RBP23.55■■□□□ 1.36
USP39-204ENST00000409766 TNRC6CQ9HCJ0 1690 aaKnown RBP23.55■■□□□ 1.36
USP39-204ENST00000409766 SEMA3EO15041 775 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 ILDR1Q86SU0 546 aaPredicted RBP23.55■■□□□ 1.36
USP39-204ENST00000409766 LY9Q9HBG7 655 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 SENP2Q9HC62 589 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 LRRC4BQ9NT99 713 aa23.55■■□□□ 1.36
USP39-204ENST00000409766 KLRK1P26718 216 aa23.54■■□□□ 1.36
USP39-204ENST00000409766 MFSD6Q6ZSS7 791 aa23.54■■□□□ 1.36
USP39-204ENST00000409766 STAG1Q8WVM7 1258 aa23.54■■□□□ 1.36
USP39-204ENST00000409766 KRT23Q9C075 422 aa23.54■■□□□ 1.36
USP39-204ENST00000409766 RCOR1Q9UKL0 485 aa23.54■■□□□ 1.36
USP39-204ENST00000409766 MYH13Q9UKX3 1938 aa23.54■■□□□ 1.36
USP39-204ENST00000409766 KDM4AO75164 1064 aa23.54■■□□□ 1.36
USP39-204ENST00000409766 LIFRP42702 1097 aa23.54■■□□□ 1.36
USP39-204ENST00000409766 MAGEB6P1A0A0J9YX57 407 aa23.53■■□□□ 1.36
USP39-204ENST00000409766 METAP2P50579 478 aaKnown RBP eCLIP23.53■■□□□ 1.362e-7■■■□□ 16.1
USP39-204ENST00000409766 FBXO18Q8NFZ0 1043 aa23.53■■□□□ 1.36
USP39-204ENST00000409766 C8orf76Q96K31 380 aa23.53■■□□□ 1.36
USP39-204ENST00000409766 RIOK1Q9BRS2 568 aaKnown RBP23.53■■□□□ 1.36
USP39-204ENST00000409766 PDS5AQ29RF7 1337 aaKnown RBP23.53■■□□□ 1.36
USP39-204ENST00000409766 NFIXQ14938 502 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 TMEM67Q5HYA8 995 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 ZNF396Q96N95 335 aaPredicted RBP23.52■■□□□ 1.36
USP39-204ENST00000409766 NUP62CLQ9H1M0 184 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 DACT1Q9NYF0 836 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 EP400Q96L91 3159 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 ESPNB1AK53 854 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 UVSSAQ2YD98 709 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 RGS22Q8NE09 1264 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 ZNF384Q8TF68 577 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 USP28Q96RU2 1077 aa23.52■■□□□ 1.36
USP39-204ENST00000409766 CEBPZQ03701 1054 aaKnown RBP23.51■■□□□ 1.35
USP39-204ENST00000409766 FTOQ9C0B1 505 aaKnown RBP eCLIP23.51■■□□□ 1.35
USP39-204ENST00000409766 DDX19AQ9NUU7 478 aaKnown RBP23.51■■□□□ 1.35
USP39-204ENST00000409766 ZBTB43O43298 467 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 ADRA2BP18089 450 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 HIBADHP31937 336 aaKnown RBP23.5■■□□□ 1.35
USP39-204ENST00000409766 OTUD7BQ6GQQ9 843 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 SDR42E1Q8WUS8 393 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 UBR3Q6ZT12 1888 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 IFIT3O14879 490 aaKnown RBP23.5■■□□□ 1.35
USP39-204ENST00000409766 NPHP1O15259 732 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 RXRAP19793 462 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 CDC27P30260 824 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 PPARAQ07869 468 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 NFXL1Q6ZNB6 911 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 BICD2Q8TD16 824 aa23.5■■□□□ 1.35
USP39-204ENST00000409766 CDKL5O76039 1030 aa23.49■■□□□ 1.35
USP39-204ENST00000409766 MAP3K11Q16584 847 aa23.49■■□□□ 1.35
USP39-204ENST00000409766 MICU3Q86XE3 530 aa23.49■■□□□ 1.35
USP39-204ENST00000409766 TFCP2L1Q9NZI6 479 aa23.49■■□□□ 1.35
USP39-204ENST00000409766 ANAPC4Q9UJX5 808 aa23.49■■□□□ 1.35
USP39-204ENST00000409766 IRS2Q9Y4H2 1338 aa23.49■■□□□ 1.35
USP39-204ENST00000409766 NR1I2O75469 434 aa23.49■■□□□ 1.35
USP39-204ENST00000409766 MTA3Q9BTC8 594 aa23.49■■□□□ 1.35
USP39-204ENST00000409766 RNF41Q9H4P4 317 aaPredicted RBP23.49■■□□□ 1.35
USP39-204ENST00000409766 FAM217BQ9NTX9 383 aaPredicted RBP23.49■■□□□ 1.35
USP39-204ENST00000409766 ZBTB22O15209 634 aa23.48■■□□□ 1.35
USP39-204ENST00000409766 NTRK3Q16288 839 aa23.48■■□□□ 1.35
USP39-204ENST00000409766 CAMK4Q16566 473 aa23.48■■□□□ 1.35
USP39-204ENST00000409766 HS1BP3Q53T59 392 aa23.48■■□□□ 1.35
USP39-204ENST00000409766 NSUN4Q96CB9 384 aaKnown RBP23.48■■□□□ 1.35
USP39-204ENST00000409766 CLSTN2Q9H4D0 955 aa23.48■■□□□ 1.35
USP39-204ENST00000409766 GJB4Q9NTQ9 266 aa23.48■■□□□ 1.35
USP39-204ENST00000409766 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.47■■□□□ 1.35
USP39-204ENST00000409766 CCDC192P0DO97 292 aa23.47■■□□□ 1.35
USP39-204ENST00000409766 RRP12Q5JTH9 1297 aaKnown RBP23.47■■□□□ 1.35
USP39-204ENST00000409766 CPLX2Q6PUV4 134 aaKnown RBP23.47■■□□□ 1.35
USP39-204ENST00000409766 RBM43Q6ZSC3 357 aaKnown RBP23.47■■□□□ 1.35
USP39-204ENST00000409766 CNBD1Q8NA66 436 aa23.47■■□□□ 1.35
USP39-204ENST00000409766 SLC12A7Q9Y666 1083 aa23.47■■□□□ 1.35
USP39-204ENST00000409766 NID2Q14112 1375 aa23.47■■□□□ 1.35
USP39-204ENST00000409766 BRWD3Q6RI45 1802 aa23.47■■□□□ 1.35
USP39-204ENST00000409766 DYNLL1P63167 89 aaKnown RBP23.47■■□□□ 1.35
USP39-204ENST00000409766 TXNRD3Q86VQ6 643 aa23.47■■□□□ 1.35
USP39-204ENST00000409766 TNMDQ9H2S6 317 aa23.47■■□□□ 1.35
USP39-204ENST00000409766 ECM29Q5VYK3 1845 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 BAZ2AQ9UIF9 1905 aaKnown RBP23.46■■□□□ 1.35
USP39-204ENST00000409766 CCDC69A6NI79 296 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 GOLGA8AA7E2F4 631 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 CLCN1P35523 988 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 GRAPQ13588 217 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 BRAPQ7Z569 592 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 GRAPLQ8TC17 118 aaPredicted RBP23.46■■□□□ 1.35
USP39-204ENST00000409766 MYL10Q9BUA6 226 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 BRIP1Q9BX63 1249 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 TOMM22Q9NS69 142 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 RTEL1Q9NZ71 1219 aa23.46■■□□□ 1.35
USP39-204ENST00000409766 MECOMQ03112 1051 aa23.45■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms