RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SLC9C1Q4G0N8 1177 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 CCDC73Q6ZRK6 1079 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 CENPQQ7L2Z9 268 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 DAAM2Q86T65 1068 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 MAPKAPK5Q8IW41 473 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 TGFBRAP1Q8WUH2 860 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 AATFQ9NY61 560 aaKnown RBP eCLIP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 ADGRB3O60242 1522 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 ATP7BP35670 1465 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 DKC1O60832 514 aaKnown RBP eCLIP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 SLC1A4P43007 532 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 MAP3K11Q16584 847 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 BLOC1S2Q6QNY1 142 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 WRNIP1Q96S55 665 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 ZBTB21Q9ULJ3 1066 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 GOLGA8AA7E2F4 631 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 GOLGA8BA8MQT2 603 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 HOXB7P09629 217 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 RARSP54136 660 aaKnown RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 CERKLQ49MI3 558 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 CCDC82Q8N4S0 544 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 ZBTB38Q8NAP3 1195 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 PPM1EQ8WY54 764 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 CEP131Q9UPN4 1083 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 MED14O60244 1454 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 GBP2P32456 591 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 STK3Q13188 491 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 PRAG1Q86YV5 1406 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 CTCFP49711 727 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 NLRX1Q86UT6 975 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 TRIM47Q96LD4 638 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 ADD3Q9UEY8 706 aaKnown RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 POLR3GO15318 223 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 PARP1P09874 1014 aaKnown RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 CBX1P83916 185 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 SSRP1Q08945 709 aaKnown RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 TTLL7Q6ZT98 887 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 MARCH10Q8NA82 808 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-202ENST00000409435 SDF4Q9BRK5 362 aa8.34□□□□□ -1.07
SCN9A-202ENST00000409435 BRD2P25440 801 aaKnown RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 ODR4Q5SWX8 454 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 GLG1Q92896 1179 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 ZNF396Q96N95 335 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 GPCPD1Q9NPB8 672 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 CETPP11597 493 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 CCDC148Q8NFR7 591 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 GPR101Q96P66 508 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 ELP3Q9H9T3 547 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 SETD1BQ9UPS6 1966 aaKnown RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 ANKRD62A6NC57 917 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 SMC1AQ14683 1233 aaKnown RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 WTAPQ15007 396 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 FOXD4L6Q3SYB3 417 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 ARHGEF16Q5VV41 709 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 OLFM4Q6UX06 510 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 FOXD4L3Q6VB84 417 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 HEATR3Q7Z4Q2 680 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 COL23A1Q86Y22 540 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 SYCP3Q8IZU3 236 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 EFCC1Q9HA90 598 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 BSDC1Q9NW68 430 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 TRIM17Q9Y577 477 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 CALML3P27482 149 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 NFIXQ14938 502 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 PODNQ7Z5L7 613 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 PRAMEF22A3QJZ6 481 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 TMEM88BA6NKF7 163 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 EYA2O00167 538 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 MYL3P08590 195 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 SRGAP2BP0DMP2 458 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 RPS12P25398 132 aaKnown RBP8.33□□□□□ -1.08
SCN9A-202ENST00000409435 NAPAP54920 295 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 SYT17Q9BSW7 474 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 GBP3Q9H0R5 595 aa8.33□□□□□ -1.08
SCN9A-202ENST00000409435 ALAS1P13196 640 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 ABCB5Q2M3G0 1257 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 TBC1D9BQ66K14 1250 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 MIGA2Q7L4E1 593 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 TMTC2Q8N394 836 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 SMARCE1Q969G3 411 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 PKD2L1Q9P0L9 805 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 PARD3Q8TEW0 1356 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 ACTN1P12814 892 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 ATG3Q9NT62 314 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 ADGRL2O95490 1459 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 SASH1O94885 1247 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 GMPSP49915 693 aaPredicted RBP8.32□□□□□ -1.08
SCN9A-202ENST00000409435 CHRNDQ07001 517 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 STK38Q15208 465 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 IQCEQ6IPM2 695 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 CCDC91Q7Z6B0 441 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 LUZP1Q86V48 1076 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 FNBP4Q8N3X1 1017 aaPredicted RBP8.32□□□□□ -1.08
SCN9A-202ENST00000409435 ECHDC1Q9NTX5 307 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 TRPC6Q9Y210 931 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 BTDP43251 543 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 TMCO3Q6UWJ1 677 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 GIGYF2Q6Y7W6 1299 aaKnown RBP8.32□□□□□ -1.08
SCN9A-202ENST00000409435 EVI5LQ96CN4 794 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms